Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16270 674 / 0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) AT1G79570 658 / 0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT2G35050 599 / 0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G04700 467 / 8e-152 PB1 domain-containing protein tyrosine kinase (.1) AT3G24715 457 / 3e-147 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT3G46920 433 / 1e-137 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G57610 430 / 1e-137 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G67890 188 / 2e-50 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT5G49470 181 / 1e-49 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT1G73660 186 / 4e-49 protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031173 [exp] 1372 / 0 AT1G79570 963 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10038160 [exp] 458 / 3e-157 AT3G24715 527 / 2e-179 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10001315 [exp] 433 / 1e-143 AT5G57610 657 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10006977 [exp] 433 / 1e-138 AT5G57610 1048 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10040006 [exp] 432 / 2e-136 AT3G46920 604 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10019577 [exp] 434 / 3e-136 AT3G46920 606 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10025941 [exp] 374 / 2e-115 AT3G24715 424 / 2e-129 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10031341 [exp] 186 / 2e-49 AT1G73660 682 / 0.0 protein tyrosine kinase family protein (.1) Lus10027247 [exp] 184 / 2e-48 AT1G18160 987 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G095200 [exp] 701 / 0 AT1G79570 641 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.007G069500 [exp] 669 / 0 AT1G16270 994 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) Potri.001G123500 [exp] 618 / 0 AT2G35050 660 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.003G110000 [exp] 607 / 0 AT2G35050 672 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.001G052000 [exp] 465 / 2e-150 AT1G04700 721 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.003G176100 [exp] 457 / 1e-147 AT1G04700 725 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.006G170700 [exp] 439 / 2e-140 AT5G57610 1087 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.006G190200 [exp] 437 / 3e-137 AT3G46920 652 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.018G095800 [exp] 429 / 2e-136 AT5G57610 1075 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.018G114300 [exp] 422 / 1e-131 AT3G46920 646 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10031749 pacid=23180771 polypeptide=Lus10031749 locus=Lus10031749.g ID=Lus10031749.BGIv1.0 annot-version=v1.0 ATGCCAGTACAAGGAGGGACGAATGAAGGATGGGCATATGGTACCTTGCAAGTGCCAAACACACACGCCTTGGGAAATGAGGCGAATCCGAATACTGATG GTTATACTCAGCAAGATGCTAACTTGGTTAAATCTACTATGCCACAGAGAACATTGCCGGTTACTGCTGACGAGACGCAATCATCAGTTGTTGTTCCGGA GAAGGATTTGCATTCTATGCCTTCCAGAGATGAGGAAGCAAGGCGGGAACCTGGAAAGATAGTTTCTTTGGCTGGTGGTGCTACAACAAATGTAGTTCAG GTTCCGAAATCTTACGAAGATGGTCAATGTCCGACTTCAAATAGTGCTGTTTCCGATCCGGTGGACTTGAGTTATCTCGAGTCGTCTATTCCTCCACAGA GAGTTTACTATTCGGAGAGGCTACCGAGGGAGACAGCAGGGCTGTTACATAGAATATCTAAATCTGATGACTCCCTTGGTCCACAGATTCTCGGTTCTCA TTCGCGGTCTGATATTCCTGAGCATGATTCAATTGCTGAATCTGTAGAAAAGTTGGGCCAAAATAATAATCTAACTCTTGATGAGAAAACACTCAAGGGA GAACCACCTCAATCAATCGATTTAGCAAATAAGGAAACGCAAGACAGCTCAGCTAAAGAGGTCGCTGAATCTGTTACAGACACCAAACAAGCAGATATTG TTGTGAATATCGATGACAGATTCCCTCAGGATTTTCTCTCTGAGTTGTTTGCCAATACTACCCCCGGCGTTGCTCATACAAACAACGATGGAGCTGGCGT AAGCGTGAACATGGAAAATTATGAACCTAGGAGGTGGTCTTATTTTCAGAAGTTGGCACAGGAAGAGTTCATTGTTAAGGATGTGTCCCTTATTGACCAG GACCATCTTCCTATGGTAGCTCCTCCACTAACAAAAGTTCAAGCGGAACTCAAATCTCATCACTTTTCACCTTTGCCCACTAATGTAGTTTCAACAAGCC AGAGTGCTTTACCTCGAATCACTGAAACTTCGGATGATGTGTCGGAGTACAATCATCCACGGACCAAGGAAATCGACAGCTTGCAGTTTGAGGCGATGAT TGAGAACCTGAAATCGCCCGAATCTCAATACGAGGACGGGAAGTTGGAGAAGAAGGATGCTGGTCTTCCTCCTATTCCTTCTTCAGAGGAAATTGATTTT AGTTCTTTGCAGATTATAAAGAATGAAGATCTTGAAGAACTCAAGGAACTTGGTGCTGGTACTTTTGGCACTGTCTATCATGGAAAATGGAGAGGAAGTG ATATTGCCATTAAGAGACTAAAGAAAATATGTTTCACGGGAAGATCATCAGAACAACAAAAGCTGACTCTAGAGTTCTGGCACGAAGCTGAAATCCTTTC GAAACTTCATCACCCGAATGTGGTGGCCTTCTATGGTGTAGTTCAAGATGGACCTGGAGGGACATTAGCTACTGTAGCAGAGTACATGGTTGATGGCTCT CTTAGGCATGTTTTGCTCCTTAAAGACAGGTATTTGGATCGCCGCAAGAGGCTTCTAATTGCTATGGATGCTGCATTCGGGATGGAATATCTACACTCGA AAAACATTGTCCATTTTGATTTGAAATGTGACAATTTGCTCGTTAACTTGAAAGATCCTCAACGACCAATATGCAAAGTTGCTGACTTTGGTCTCTCGAA AATCAAGAGAAACACCTTGGTTTCTGGAGGTGTACGAGGGACATTACCATGGATGGCCCCGGAACTCCTAAATGGCGGCAGCAACAAAGTCTCCGAAAAG GTTGATGTATTCTCTTTCGGGATCGTATTATGGGAGATTCTTACCGGAGAAGAGCCCTACGCTAACATGCACTATGGCGCAATCATAGGAGGAATTGTGA ACAACACGCTAAGGCCGACGATACCAAGCTTCTGCGATCCGGAATGGAGAAGGTTAATGGAGAAGTGTTGGGCGCCTAACCCTGAAGCAAGACCTTCCTT CACTGAGATTGCTAGCCAACTGAGAACAATGTCAGCAGCAGCTGTTAGCCAACCCAAAGGGCACGGAGGTCATAAACCACCAAAGTAA
AA sequence Show only first row Show all	>Lus10031749 pacid=23180771 polypeptide=Lus10031749 locus=Lus10031749.g ID=Lus10031749.BGIv1.0 annot-version=v1.0 MPVQGGTNEGWAYGTLQVPNTHALGNEANPNTDGYTQQDANLVKSTMPQRTLPVTADETQSSVVVPEKDLHSMPSRDEEARREPGKIVSLAGGATTNVVQ VPKSYEDGQCPTSNSAVSDPVDLSYLESSIPPQRVYYSERLPRETAGLLHRISKSDDSLGPQILGSHSRSDIPEHDSIAESVEKLGQNNNLTLDEKTLKG EPPQSIDLANKETQDSSAKEVAESVTDTKQADIVVNIDDRFPQDFLSELFANTTPGVAHTNNDGAGVSVNMENYEPRRWSYFQKLAQEEFIVKDVSLIDQ DHLPMVAPPLTKVQAELKSHHFSPLPTNVVSTSQSALPRITETSDDVSEYNHPRTKEIDSLQFEAMIENLKSPESQYEDGKLEKKDAGLPPIPSSEEIDF SSLQIIKNEDLEELKELGAGTFGTVYHGKWRGSDIAIKRLKKICFTGRSSEQQKLTLEFWHEAEILSKLHHPNVVAFYGVVQDGPGGTLATVAEYMVDGS LRHVLLLKDRYLDRRKRLLIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPQRPICKVADFGLSKIKRNTLVSGGVRGTLPWMAPELLNGGSNKVSEK VDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPSFCDPEWRRLMEKCWAPNPEARPSFTEIASQLRTMSAAAVSQPKGHGGHKPPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16270			Protein kinase superfamily pro...		Lus10031749 [exp]	0	1
AT5G13820		HPPBF-1, ATTBP1...	H-PROTEIN PROMOTE, telomeric D...		Lus10040285 [exp]	1.0	0.8642
AT2G38250	Trihelix		Homeodomain-like superfamily p...		Lus10002481 [exp]	3.3	0.8248
AT4G39140			RING/U-box superfamily protein...		Lus10017978 [exp]	4.9	0.8338
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Lus10005184 [exp]	8.0	0.8076
AT4G36210			Protein of unknown function (D...		Lus10028363 [exp]	8.4	0.8344
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Lus10012149 [exp]	9.6	0.8499
AT2G41830			Uncharacterized protein (.1)		Lus10026298 [exp]	12.2	0.8264
AT3G09850			D111/G-patch domain-containing...		Lus10036327 [exp]	12.5	0.8235
AT4G32250			Protein kinase superfamily pro...		Lus10019343 [exp]	14.5	0.7988
AT2G15900			Phox-associated domain;Phox-li...		Lus10023847 [exp]	14.5	0.8312

Compare expression of checked genes

Lus10031749 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.