Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79570 301 / 1e-92 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G16270 269 / 3e-81 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) AT2G35050 220 / 7e-64 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G04700 143 / 2e-37 PB1 domain-containing protein tyrosine kinase (.1) AT3G24715 143 / 3e-37 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT3G46920 137 / 2e-35 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G57610 135 / 8e-35 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G49920 121 / 9e-32 Octicosapeptide/Phox/Bem1p family protein (.1) AT3G26510 102 / 1e-25 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) AT4G05150 106 / 3e-25 Octicosapeptide/Phox/Bem1p family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031173 [exp] 617 / 0 AT1G79570 963 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10040006 [exp] 154 / 5e-41 AT3G46920 604 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10025941 [exp] 153 / 1e-40 AT3G24715 424 / 2e-129 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10019577 [exp] 152 / 2e-40 AT3G46920 606 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10038159 [exp] 151 / 4e-40 AT3G24715 229 / 4e-62 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10001314 [exp] 140 / 4e-37 AT5G57610 393 / 1e-125 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10006977 [exp] 141 / 1e-36 AT5G57610 1048 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10002588 [exp] 114 / 7e-28 AT4G05150 319 / 2e-104 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10018412 [exp] 107 / 2e-25 AT4G05150 304 / 1e-98 Octicosapeptide/Phox/Bem1p family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G095200 [exp] 397 / 4e-128 AT1G79570 641 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.007G069500 [exp] 394 / 4e-127 AT1G16270 994 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) Potri.001G123500 [exp] 335 / 1e-104 AT2G35050 660 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.003G110000 [exp] 317 / 8e-98 AT2G35050 672 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.003G176100 [exp] 167 / 1e-45 AT1G04700 725 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.001G052000 [exp] 161 / 2e-43 AT1G04700 721 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.006G190200 [exp] 152 / 2e-40 AT3G46920 652 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.018G114300 [exp] 151 / 5e-40 AT3G46920 646 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.006G170700 [exp] 137 / 3e-35 AT5G57610 1087 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.018G095800 [exp] 131 / 2e-33 AT5G57610 1075 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10031750 pacid=23180674 polypeptide=Lus10031750 locus=Lus10031750.g ID=Lus10031750.BGIv1.0 annot-version=v1.0 ATGGAGCAGTCAGGTATCCATCATCAATATGATTCTAGGGAACATGTCCCGGAAGGTTTCCACCATCCTGCATCTCAAGCATTTGCAGTGGATCCTGCGA TGGGTGGTGGAAATCCGCACTTGATACTACTACCTGATCCCAATGCATCAGGAGTTAAACCAGTACGCAATTACTCAATACAGACAGGGGAAGAATTCGC TCTCGAATTCATGCGTGATCGAGGTAATCCTAAGCCGCCTCTGTTGCAAAACTGTGGTGTTGAACCAAACTACGCCACGGGGTATATGGAATTGAAAGGA ATGCTAGGTATCAGCCATACTGGATCGGAAACTGGATCAGATTTATCGATGGTCACCGTTGTGGATAAAGGCGCCAAAGATTTCGGAAGAACAAACTCTA ATTTACATGAAGACAGAAGCGTCTATGGTTCTGTTCAGTCAATTCCACGTACTTCTTCGGCCTATGGGAGTAGGGGAGCTTTGAATGGTGGTTATACATC GTCTAGCACTTCTGGTTCATTGACCAAGATGAAAGTTCTCTGTAGCTTTGGTGGTAAAATCTTGCCCCGGCCTAGTGATGGAAAGCTCAGGTATGTTGGG GGAGAAACTCGCATTATACGCGTAAGTAGGGATGTTTCCTTTCAGGAGCTCAGGCAGAAAACTTTAGCCATTTATAGTGAGGCTCATGTCATAAAATATC AACTTCCTGGAGAAGATCTCGATGCATTGGTTTCTGTTTCTTGCGATGAGGATCTGATGAATATGATGGAGGAATGGAATGAGGTCGAAGATAAAGATGG ATCTCAAAAGCTAAGGATGTTCTTGTTCTCCTTGAGTGATTTGGATGATAATAATCAGTTTGGTCTAGGAAGCACGGAAGGTGATTCTGAAATTCAATTT GTGGTTGCTGTAAATTGCATGGATATTGGATCTAGAAAAGGCTCAGCATTACAAGGTTTGGGGAGCTCTTCAGGAAACAATTTAGATGAGCTGGATAGGT TAACCAGTGATGTGGAGGCCAATAGAGCTGTGGCGCCTTCCTATATTCCGCACAGATCCTTCAAAGTTCGTCCAGTGCCTATGAAAGGCAGATGCCTATG A
AA sequence Show only first row Show all	>Lus10031750 pacid=23180674 polypeptide=Lus10031750 locus=Lus10031750.g ID=Lus10031750.BGIv1.0 annot-version=v1.0 MEQSGIHHQYDSREHVPEGFHHPASQAFAVDPAMGGGNPHLILLPDPNASGVKPVRNYSIQTGEEFALEFMRDRGNPKPPLLQNCGVEPNYATGYMELKG MLGISHTGSETGSDLSMVTVVDKGAKDFGRTNSNLHEDRSVYGSVQSIPRTSSAYGSRGALNGGYTSSSTSGSLTKMKVLCSFGGKILPRPSDGKLRYVG GETRIIRVSRDVSFQELRQKTLAIYSEAHVIKYQLPGEDLDALVSVSCDEDLMNMMEEWNEVEDKDGSQKLRMFLFSLSDLDDNNQFGLGSTEGDSEIQF VVAVNCMDIGSRKGSALQGLGSSSGNNLDELDRLTSDVEANRAVAPSYIPHRSFKVRPVPMKGRCL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79570			Protein kinase superfamily pro...		Lus10031750 [exp]	0	1
AT2G15900			Phox-associated domain;Phox-li...		Lus10012043 [exp]	1.0	0.9539
AT5G45160			Root hair defective 3 GTP-bind...		Lus10036197 [exp]	1.7	0.9460
AT5G19390			Rho GTPase activation protein ...		Lus10036048 [exp]	2.4	0.9467
AT5G53480			ARM repeat superfamily protein...		Lus10023246 [exp]	4.2	0.9285
AT5G47490			RGPR-related (.1)		Lus10028946 [exp]	8.1	0.9370
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10030357 [exp]	8.1	0.9203
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Lus10038725 [exp]	10.0	0.8746
AT4G31570			unknown protein		Lus10026934 [exp]	10.2	0.9301
AT2G28520		VHA-A1	vacuolar proton ATPase A1 (.1)		Lus10036133 [exp]	10.5	0.9270
AT1G58350		ZW18	Putative serine esterase fami...		Lus10036215 [exp]	11.2	0.9016

Compare expression of checked genes

Lus10031750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.