Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16445 86 / 1e-20 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031174 [exp] 249 / 1e-84 AT1G16445 311 / 8e-107 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G069400 [exp] 108 / 3e-29 AT1G16445 311 / 5e-107 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031751 pacid=23180723 polypeptide=Lus10031751 locus=Lus10031751.g ID=Lus10031751.BGIv1.0 annot-version=v1.0 ATGGCGGGATTGAAGCTCAGCTACTGCTTCTCTCCTCATCGCCATTGGTTCACTTCACTACACAAAATCCTAACAACTACTATTCCATTCTGCGATTCTT CCCGCCTTCATTACTCATCCGGCAAATATTCTCATTCTTGCCGAACAATACCAGCTGCCATTTCTGTGAAAAAGAACCGAACTTTCTCCTCTTCCGCCGC CTATGATTCTCCTCTTTCGGGATTGGATGACATTTTGGTTGGGTACCTCTTGGGGAAGAATAAGACAACTGAAGTACATTTGGTGTGGAGTTGTGTAGTT CAGCAAGGGGATACTGTGATTGATGCCACTTGTGGCAATGGTCATGACGCCTTAGCTATGGTCAAAATGGTTGCTGACAAATCGGGCAGAGGCCGTGTCT ATGGACTCTACTGGTTTTCTTGTTCAAAAGATGATCATATCAAACATTCTTATCTGATTCTTAAAAGTCCAAACTGA
AA sequence Show only first row Show all	>Lus10031751 pacid=23180723 polypeptide=Lus10031751 locus=Lus10031751.g ID=Lus10031751.BGIv1.0 annot-version=v1.0 MAGLKLSYCFSPHRHWFTSLHKILTTTIPFCDSSRLHYSSGKYSHSCRTIPAAISVKKNRTFSSSAAYDSPLSGLDDILVGYLLGKNKTTEVHLVWSCVV QQGDTVIDATCGNGHDALAMVKMVADKSGRGRVYGLYWFSCSKDDHIKHSYLILKSPN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16445			S-adenosyl-L-methionine-depend...		Lus10031751 [exp]	0	1
AT5G50600		ATHSD1	hydroxysteroid dehydrogenase 1...		Lus10031448 [exp]	5.2	0.7690
					Lus10017831 [exp]	7.9	0.7583
					Lus10008514 [exp]	13.1	0.7032
AT2G33280			Major facilitator superfamily ...		Lus10004407 [exp]	15.5	0.6953
					Lus10010102 [exp]	17.3	0.7363
					Lus10012394 [exp]	22.7	0.6921
AT4G18470		SNI1	SUPPRESSOR OF NPR1-1, INDUCIBL...		Lus10015299 [exp]	36.2	0.5896
					Lus10000289 [exp]	48.1	0.5837
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10011472 [exp]	54.1	0.6365
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10005213 [exp]	56.1	0.6084

Compare expression of checked genes

Lus10031751 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.