Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30690 410 / 2e-136 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G72160 357 / 1e-116 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G09160 344 / 4e-109 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT3G51670 291 / 3e-92 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G22530 279 / 2e-84 PATL2 PATELLIN 2 (.1) AT1G72150 268 / 4e-81 PATL1 PATELLIN 1 (.1) AT4G34580 71 / 2e-12 SRH1, COW1 SHORT ROOT HAIR 1, CAN OF WORMS1, Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G39170 70 / 3e-12 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G19650 70 / 3e-12 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G55840 68 / 4e-12 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031176 [exp] 532 / 0 AT1G30690 130 / 5e-33 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10031175 [exp] 479 / 5e-168 AT1G30690 273 / 2e-89 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10038435 [exp] 451 / 3e-152 AT1G30690 513 / 2e-178 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10001542 [exp] 346 / 7e-112 AT1G72160 450 / 8e-155 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10009453 [exp] 307 / 2e-99 AT1G72160 389 / 9e-134 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10001539 [exp] 304 / 2e-98 AT1G72160 490 / 1e-173 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10003552 [exp] 303 / 1e-95 AT1G30690 290 / 4e-92 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10001269 [exp] 291 / 1e-91 AT3G51670 602 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10012219 [exp] 287 / 3e-91 AT3G51670 564 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G461400 [exp] 449 / 8e-152 AT1G30690 497 / 4e-172 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.019G079300 [exp] 374 / 1e-121 AT1G72160 545 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.013G105900 [exp] 371 / 9e-121 AT1G72160 574 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.T011100 [exp] 354 / 9e-114 AT1G72160 454 / 6e-155 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.T011101 [exp] 354 / 9e-114 AT1G72160 452 / 4e-154 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.004G138200 [exp] 351 / 1e-112 AT1G72160 457 / 2e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.013G106000 [exp] 346 / 1e-110 AT1G72160 457 / 6e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.019G079500 [exp] 345 / 4e-110 AT1G72160 439 / 1e-148 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.005G224800 [exp] 335 / 2e-108 AT1G30690 333 / 4e-109 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.016G127700 [exp] 291 / 8e-92 AT3G51670 641 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF03765 [flax] [poplar] CRAL_TRIO_N CRAL/TRIO, N-terminal domain CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10031752 pacid=23180698 polypeptide=Lus10031752 locus=Lus10031752.g ID=Lus10031752.BGIv1.0 annot-version=v1.0 ATGGCAGCTGAAAGCATCTCAGAGAAGCCTCCCATGGTTTCTGAATCCCAAGAATCACAAGGCCAGCATCAACTCAAACAACCATCGCCGACATCCACGA CTACAACTACGACAGATGCTGCTGCTGCTACTCCTCCCTTGGAACAACAACAACAACAACAGCAACAAAAACCATCATCCTCACCAGAAGAACACCATGT TCCTCCCGAACAGCCTGCAATTGTTGATGTCGTTGAGAAGGCGATAGATCAGCCGACACCTCAACCTATCCAAGAACAGCAGCAGCAACAACAACAACAA CAACAACAACAACAACAACCTGACTCTCAGGAAAAACGACAAGAATCACCTACAAAAGGAAATGAAGCTCCTTTGAACGTTGCTGAGAATGAGAAAGTTA TCCCTGTGGAAAAAGAGGATCTTTCTGCCTCTCAGGTTAAGGAAGAACCAAAGGAAATGGTAATAAAAGCTGAAGCAACAAAAGAAGAAGGCAAGAGTCC TGATGGTGAGAAGAAAGCTGAGGAAGTGGTTGTTCAGAAAAAAGAAGTCACCTTTGCTGTTGACGAAATCGAGAAGAACAAGGGCATTCACGAGGAAAGC TCTTCGTCTCGAGAACAAACAGTCCTCCTCTCCGATTTGAAAGAGTACGAGCGCAAGGCGTTGCTGGAACTCAAATCCAAGATTGAAGAAGCTGTCCTGG CCAACAAATTCTTCGAGGATATACCTGAACATAATGAAAAGGTCAAACCTTCAGATCAACAGAAGGAAAAATCCGAGATGACTGAAGGCAGCAAAGGAGA AACTAAACAAACAGAAGCAGAAGATGAGAATAAAGTCAAAGATGAAAGCTTGACCGCAGAGAAAGAACGGAAAGGGAAAGAGATTCTGATTGATGATTCT GCTGTTGTTAATCATCAATATCAGAATCAGAACCTTTCTATATGGGGGGCCTCGCTGATGCCAAGCAAAGGAAACGGGAGCACGGACATGGTGCTCCTGA AATTCCTGAGGGCAAGAGAGTTTCGTGTGATCGAAGCATTCGAAATGCTGAAAAACACCTTGAAATGGAGGAAGGAGAACAAAATTGACTCGATTCTGGA CGAGAAGGACGACCAGACCGATCATCTCGATCCGGTCGTGTACGAGGACGGCCACGACCGGGAGGGACACCCGATCTGTTACAATGTGTACGGAATGCTG GGATTTGACAAAGCTGCTGATAAGATGCTTGGAGATGAAGAAAAGAGGGAGAGGTTTATGAGGTGGAGGATAAGGAAGATGGAGAAATGTGTGATTGAAC AGCTGGATTTCAATCCTGGTGGGACTTGCGAGATTCTTCAGATCAATGATCTCAAGAACACTCCTTTGCCTACTAAGAAAGAAGTCCGGCTTGCCACCAG GAGAGTTGTTGAGGTTCTTCAGGACAACTACCCTGAATTTGTCTATACCAACATATTTATCAATGTGCCATTGTGGTACTACGCGTTCAATACAGTTCTG TCCCCTTTCCTAACTCCAAGGACTAAGAACAAGTTCATTACAGCCAGGCCATCCAAGGTTACAGAGATTCTACTAAAATACATTGCCGCGGAGCAACTTC CAGTAAGGTATGGAGGCCTGAAGATGGACAATGATCCAGATTTCTGTCCCAATGATGTCGCGAAAGAGGTGTGGGTGAAGTCAGCATCCACCGAAATCAT AGAGATACCGGTGCCAGAGGGAGGCAAAACAATGGTATGGGACCTCACAGTGTCGAGCTGGGAAGTGAGCTACAAGGAAGAATTCGTACCGACAAATGAA AACTCATACACGATAATAGTTCAGAAGACAAAGAAGATAAATTGGCAGGAAGGAACAATCCGGAATTCATTCGGGAATCCCGAGCCGGGGAAGATTCTGG TCACAATTGACAATGCTTCCTTCAGGAAGAAACGCATCCTTTACAGATACAAGGCCAAGAATGCCTCATCTTCATGA
AA sequence Show only first row Show all	>Lus10031752 pacid=23180698 polypeptide=Lus10031752 locus=Lus10031752.g ID=Lus10031752.BGIv1.0 annot-version=v1.0 MAAESISEKPPMVSESQESQGQHQLKQPSPTSTTTTTTDAAAATPPLEQQQQQQQQKPSSSPEEHHVPPEQPAIVDVVEKAIDQPTPQPIQEQQQQQQQQ QQQQQQPDSQEKRQESPTKGNEAPLNVAENEKVIPVEKEDLSASQVKEEPKEMVIKAEATKEEGKSPDGEKKAEEVVVQKKEVTFAVDEIEKNKGIHEES SSSREQTVLLSDLKEYERKALLELKSKIEEAVLANKFFEDIPEHNEKVKPSDQQKEKSEMTEGSKGETKQTEAEDENKVKDESLTAEKERKGKEILIDDS AVVNHQYQNQNLSIWGASLMPSKGNGSTDMVLLKFLRAREFRVIEAFEMLKNTLKWRKENKIDSILDEKDDQTDHLDPVVYEDGHDREGHPICYNVYGML GFDKAADKMLGDEEKRERFMRWRIRKMEKCVIEQLDFNPGGTCEILQINDLKNTPLPTKKEVRLATRRVVEVLQDNYPEFVYTNIFINVPLWYYAFNTVL SPFLTPRTKNKFITARPSKVTEILLKYIAAEQLPVRYGGLKMDNDPDFCPNDVAKEVWVKSASTEIIEIPVPEGGKTMVWDLTVSSWEVSYKEEFVPTNE NSYTIIVQKTKKINWQEGTIRNSFGNPEPGKILVTIDNASFRKKRILYRYKAKNASSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10031752 [exp]	0	1
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Lus10005245 [exp]	3.5	0.8046
AT1G11270			F-box and associated interacti...		Lus10025893 [exp]	5.9	0.8064
AT3G06070			unknown protein		Lus10010508 [exp]	9.3	0.8047
AT5G54380		THE1	THESEUS1, protein kinase famil...		Lus10038595 [exp]	10.2	0.7527
AT3G15200			Tetratricopeptide repeat (TPR)...		Lus10031269 [exp]	11.5	0.7703
AT2G47880			Glutaredoxin family protein (....		Lus10005937 [exp]	14.1	0.7343
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10030518 [exp]	15.2	0.8041
AT1G11340			S-locus lectin protein kinase ...		Lus10030768 [exp]	16.8	0.7824
AT1G53440			Leucine-rich repeat transmembr...		Lus10041937 [exp]	19.4	0.7700
AT4G13550			triglyceride lipases;triglycer...		Lus10004394 [exp]	24.0	0.7363

Compare expression of checked genes

Lus10031752 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.