Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79230 553 / 0 STR1, ATRDH1, ATMST1, ST1 ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 1, mercaptopyruvate sulfurtransferase 1 (.1.2.3) AT1G16460 493 / 4e-176 STR2, ATMST2, ATRDH2 ARABIDOPSIS THALIANA MERCAPTOPYRUVATE SULFURTRANSFERASE 2, rhodanese homologue 2 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031177 [exp] 753 / 0 AT1G79230 550 / 0.0 ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 1, mercaptopyruvate sulfurtransferase 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G069300 [exp] 599 / 0 AT1G79230 575 / 0.0 ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 1, mercaptopyruvate sulfurtransferase 1 (.1.2.3) Potri.005G095300 [exp] 522 / 0 AT1G79230 523 / 0.0 ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 1, mercaptopyruvate sulfurtransferase 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00581 [flax] [poplar] Rhodanese Rhodanese-like domain
Representative CDS sequence Show only first row Show all	>Lus10031753 pacid=23180592 polypeptide=Lus10031753 locus=Lus10031753.g ID=Lus10031753.BGIv1.0 annot-version=v1.0 ATGGCATCCACCAGTATTGTCAGGACTCTGCTTGCTCGTCGCTTTACCCAATTCTCCTCCTCTTCTCTTTCCCAAGCTCCCCGCCGATTCACCTCTCTCT TCGCCTCCAACAAGGTGCAGTGGATTAACCCCATCAGAACATCATACAAGATATCTAGTTTGATACCTCGTGCCATGGCTTCCACGTTAGGAGGGAAAGC TACTTTTTCAACACAGTCGTTATCCACCAGTGAACCTGTTGTTTCTGTTGATTGGCTTCATTCCAACCTTAAGGCACCTGACTTAAAGGTTCTGGATGCA TCTTGGTATATGCCAGATGAGCAGAGGAATCCAATTCAAGAGTATCAGGTTGCTCATATTCCTGGAGCCCTGTTCTTTGATGTAGATGGTATTTCAGATC AAACATCAAATTTGCCACACATGTTGCCAAAGGAGGAAGCTTTTGCAGCTGCTGTTTCTGCTCTAGGAATCGAGAACAAAGACGGAGTGGTGGTGTATGA CGGGAAGGGAATTTTCAGTGCAGCTCGTGTCTGGTGGATGTTCAGAGTTTTCGGACATGATAAAGTTTGGGTGTTGGATGGAGGACTTCCGAGATGGCGT GCTTTGGGATATGATGTTGAATCTAGTGCTTCTAGTGATACTATCTTGAAAGCTAGTGCTGCCAGTGAAGCGATACAAAAAGTATATCAAGGCCAAGCTG TTGGTCCGGTGACATTCGAGACAAAGTTCCAGCCTCAACTTGTCTGGACCCTTGAGCAGGTTCAAAGAAACATTGATAACAAGACATACCAACAAATAGA CGCCCGTTCACAAGCAAGGTTCGATGGTGCTGCACAAGAACCACGAAAGGGAGTTAGAAGTGGTCATGTACCTGGAAGCAAGTGCATCCCTTTTCCTCAG ATGCTCGATTCATCATCACAAACACTCTTACCAGAAGACGAGTTAAAGAAACGATTTGACCAAGAAGGCATCTCTATGGAAGCTCCAGTTGTTACCTCGT GTGGAACCGGTGTAACTGCTTGCATTCTTGCTCTGGGTCTTCACCGACTTGGGAAACAAGACGTACCAGTGTATGATGGATCATGGACGGAATGGGGTGC TCATCCCGAGACCCCAGTCGAGACTTCGGAAACCCGATCCGAGTAG
AA sequence Show only first row Show all	>Lus10031753 pacid=23180592 polypeptide=Lus10031753 locus=Lus10031753.g ID=Lus10031753.BGIv1.0 annot-version=v1.0 MASTSIVRTLLARRFTQFSSSSLSQAPRRFTSLFASNKVQWINPIRTSYKISSLIPRAMASTLGGKATFSTQSLSTSEPVVSVDWLHSNLKAPDLKVLDA SWYMPDEQRNPIQEYQVAHIPGALFFDVDGISDQTSNLPHMLPKEEAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHDKVWVLDGGLPRWR ALGYDVESSASSDTILKASAASEAIQKVYQGQAVGPVTFETKFQPQLVWTLEQVQRNIDNKTYQQIDARSQARFDGAAQEPRKGVRSGHVPGSKCIPFPQ MLDSSSQTLLPEDELKKRFDQEGISMEAPVVTSCGTGVTACILALGLHRLGKQDVPVYDGSWTEWGAHPETPVETSETRSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79230		STR1, ATRDH1, A...	ARABIDOPSIS THALIANA RHODANESE...		Lus10031753 [exp]	0	1
AT1G07080			Thioredoxin superfamily protei...		Lus10026384 [exp]	9.8	0.8489
AT5G39950		ATTRXH2, ATTRX2...	Arabidopsis thioredoxin h2, th...		Lus10030666 [exp]	10.6	0.8569
AT5G04750			F1F0-ATPase inhibitor protein,...		Lus10034146 [exp]	12.2	0.8474
AT5G43280		ATDCI1	"delta\(3,5\),delta\(2,4\)-die...		Lus10011336 [exp]	14.2	0.8574
					Lus10000816 [exp]	15.3	0.8192
AT5G11970			Protein of unknown function (D...		Lus10021581 [exp]	31.0	0.8276
AT5G63030		GRXC1	glutaredoxin C1, Thioredoxin s...		Lus10001237 [exp]	31.4	0.8438
AT5G08560			transducin family protein / WD...		Lus10001411 [exp]	43.3	0.8393
					Lus10034731 [exp]	45.1	0.8356
AT1G07040			unknown protein		Lus10030795 [exp]	54.7	0.8180

Compare expression of checked genes

Lus10031753 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.