Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12830 154 / 4e-49 SAUR-like auxin-responsive protein family (.1) AT1G56150 146 / 3e-46 SAUR-like auxin-responsive protein family (.1) AT1G16510 129 / 6e-39 SAUR-like auxin-responsive protein family (.1) AT1G79130 122 / 1e-36 SAUR-like auxin-responsive protein family (.1) AT3G43120 66 / 3e-14 SAUR-like auxin-responsive protein family (.1) AT4G34770 64 / 3e-14 SAUR-like auxin-responsive protein family (.1) AT3G61900 65 / 4e-14 SAUR-like auxin-responsive protein family (.1) AT4G34760 64 / 5e-14 SAUR-like auxin-responsive protein family (.1) AT5G10990 65 / 6e-14 SAUR-like auxin-responsive protein family (.1) AT4G34800 63 / 9e-14 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018269 [exp] 86 / 3e-21 AT1G16510 92 / 4e-24 SAUR-like auxin-responsive protein family (.1) Lus10040643 [exp] 81 / 7e-20 AT1G16510 91 / 8e-24 SAUR-like auxin-responsive protein family (.1) Lus10012190 [exp] 70 / 9e-16 AT4G34750 147 / 4e-46 SAUR-like auxin-responsive protein family (.1.2) Lus10034507 [exp] 69 / 2e-15 AT1G75590 189 / 1e-62 SAUR-like auxin-responsive protein family (.1) Lus10035716 [exp] 69 / 5e-15 AT2G24400 157 / 9e-49 SAUR-like auxin-responsive protein family (.1) Lus10042374 [exp] 67 / 8e-15 AT5G10990 125 / 8e-38 SAUR-like auxin-responsive protein family (.1) Lus10026297 [exp] 67 / 9e-15 AT5G10990 125 / 2e-37 SAUR-like auxin-responsive protein family (.1) Lus10037302 [exp] 69 / 2e-14 AT2G24400 150 / 2e-44 SAUR-like auxin-responsive protein family (.1) Lus10012426 [exp] 67 / 2e-14 AT1G75590 181 / 2e-59 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G067800 [exp] 163 / 1e-52 AT3G12830 148 / 5e-47 SAUR-like auxin-responsive protein family (.1) Potri.005G096400 [exp] 159 / 5e-51 AT3G12830 164 / 2e-53 SAUR-like auxin-responsive protein family (.1) Potri.006G278100 [exp] 76 / 5e-18 AT2G24400 179 / 5e-58 SAUR-like auxin-responsive protein family (.1) Potri.010G253900 [exp] 69 / 3e-15 AT3G20220 93 / 4e-25 SAUR-like auxin-responsive protein family (.1) Potri.006G211000 [exp] 67 / 5e-15 AT2G36210 130 / 3e-40 SAUR-like auxin-responsive protein family (.1) Potri.008G003900 [exp] 66 / 1e-14 AT2G24400 110 / 1e-31 SAUR-like auxin-responsive protein family (.1) Potri.018G132400 [exp] 66 / 3e-14 AT3G43120 64 / 2e-13 SAUR-like auxin-responsive protein family (.1) Potri.001G060400 [exp] 66 / 6e-14 AT5G50760 71 / 5e-15 SAUR-like auxin-responsive protein family (.1) Potri.010G253800 [exp] 66 / 6e-14 AT2G24400 142 / 4e-43 SAUR-like auxin-responsive protein family (.1) Potri.006G070600 [exp] 65 / 6e-14 AT5G18060 61 / 6e-13 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10031754 pacid=23180625 polypeptide=Lus10031754 locus=Lus10031754.g ID=Lus10031754.BGIv1.0 annot-version=v1.0 ATGAAGCAGCTAATCCGCCGCCTCTCCCGCGTCGCCGACTCCTCCCAGTACTCCCTCCTACGCTCCGACTCCCGCTCCTGCCGCGCCGCCTCCGTCCGCC GCGCCGAATCCTTCCGATCTTTGGTCAAATCCGCCAAGAGATCCAGCGGCGGGAAGTCCGTCCCGCAAGGATACGTCCCCGTCTACGTCGGCGACGAGAT GGAGAGGTTCGTCGTCAGCGCCGAGCTCCTCAACCACCCCGTCTTCGTCGGTCTCCTCAACTGTTCCGCTCAGGAGTACGGCTACGAGCAGCAAGGCGGC CTCCGGATCCCCTGCCACGTGTTGGCCTTCGAGCGGGTCATGGAGGCGATTCGCCTCGGTCTTCAGTCTCACGACCTCGACAACCTCCTCATCGCCGCCG CCTCCGCCTCTTCTCCCTCTCCCTCTGTAGACGGCTACTTATGA
AA sequence Show only first row Show all	>Lus10031754 pacid=23180625 polypeptide=Lus10031754 locus=Lus10031754.g ID=Lus10031754.BGIv1.0 annot-version=v1.0 MKQLIRRLSRVADSSQYSLLRSDSRSCRAASVRRAESFRSLVKSAKRSSGGKSVPQGYVPVYVGDEMERFVVSAELLNHPVFVGLLNCSAQEYGYEQQGG LRIPCHVLAFERVMEAIRLGLQSHDLDNLLIAAASASSPSPSVDGYL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12830			SAUR-like auxin-responsive pro...		Lus10031754 [exp]	0	1
AT1G56150			SAUR-like auxin-responsive pro...		Lus10031178 [exp]	5.1	0.7828
AT3G12620			Protein phosphatase 2C family ...		Lus10030302 [exp]	12.4	0.8145
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Lus10006054 [exp]	21.0	0.8033
AT1G36980			unknown protein		Lus10037355 [exp]	22.9	0.8135
AT5G26600			Pyridoxal phosphate (PLP)-depe...		Lus10001514 [exp]	28.1	0.8070
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10010926 [exp]	30.5	0.8094
AT4G14430		PEC12, IBR10, E...	DELTA\(3\), DELTA\(2\)-ENOYL C...		Lus10022199 [exp]	32.2	0.7991
					Lus10035642 [exp]	33.2	0.8054
AT4G29010		AIM1	ABNORMAL INFLORESCENCE MERISTE...		Lus10011102 [exp]	38.6	0.7815
AT5G67250		VFB4, SKIP2	VIER F-BOX PROTEINE 4, SKP1/AS...		Lus10011506 [exp]	38.6	0.7675

Compare expression of checked genes

Lus10031754 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.