Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79160 147 / 8e-44 unknown protein AT1G16500 137 / 1e-39 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031179 [exp] 305 / 2e-105 AT1G79160 197 / 5e-63 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G067300 [exp] 175 / 2e-54 AT1G79160 164 / 3e-50 unknown protein Potri.005G096800 [exp] 171 / 1e-52 AT1G79160 209 / 7e-68 unknown protein Potri.011G153600 [exp] 96 / 3e-24 AT1G79160 124 / 6e-35 unknown protein Potri.001G446800 [exp] 89 / 3e-21 AT1G79160 113 / 7e-31 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031755 pacid=23180746 polypeptide=Lus10031755 locus=Lus10031755.g ID=Lus10031755.BGIv1.0 annot-version=v1.0 ATGGCGGCTGAAGTGAGCTCTCTCATAAGGGGCATGAACGGCTACAAGGTCTCCGCCGATGATCGGAACAAGGTCGGCGAGTCCGCTCTGTTCACAAGAG ATTTGCTCGGTGCCGGCGGCGGCGGCGGGGGAAGTTCCAGTATCGGTGATGGGTCAGAGAACAATCCGTTTCAGGAATTGGACCTCGATGTTCAAGTACC CACCGGCTGGGAAAAACGCCTCGATCTGAAGTCTGGGAAGGTTTACTTGCACAGGAATAATTCATCGTCCTCCAGCAATCAACAGATATTTCAGAAGCTT GAGGATTTCAATTCCCCTGCGGGGCCGTCGTCGACGAAGATCACTCTGAATCTGTTTGACGAGAGCAGCTTGGAGCTGAAGTTAACCAACGCGGCGGTGG CAGCGGCGTCGACGTCTTCGGGGCCTTACTACCAGAGCGTTTGCACGCTGGACAAAGTGAAGTCGGCGTTGGAAAGAGCGGAGAAGGAGCCTCTGGCGGT GGGTAGAAAGAGGTCTCCTTCGTACTCTAATACGTCGTCGTCTGATTATCAAGGGACAGAGGAGAAATCGGCGGCGGCGGCTTCCCCTGTTGCGGCGGGG TGTCCTGGTTGTTTGTCGTACGTTCTGGTCATGAAGAACAATCCCAAGTGTCCGAGGTGTAATTCGATTGTTCCGATGCCGGCCATGAAGAAGCCGAGGC TTGATTTGAACATGTCGATTTGA
AA sequence Show only first row Show all	>Lus10031755 pacid=23180746 polypeptide=Lus10031755 locus=Lus10031755.g ID=Lus10031755.BGIv1.0 annot-version=v1.0 MAAEVSSLIRGMNGYKVSADDRNKVGESALFTRDLLGAGGGGGGSSSIGDGSENNPFQELDLDVQVPTGWEKRLDLKSGKVYLHRNNSSSSSNQQIFQKL EDFNSPAGPSSTKITLNLFDESSLELKLTNAAVAAASTSSGPYYQSVCTLDKVKSALERAEKEPLAVGRKRSPSYSNTSSSDYQGTEEKSAAAASPVAAG CPGCLSYVLVMKNNPKCPRCNSIVPMPAMKKPRLDLNMSI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79160			unknown protein		Lus10031755 [exp]	0	1
AT1G48960			Adenine nucleotide alpha hydro...		Lus10038945 [exp]	1.7	0.9023
AT1G72175			RING/U-box protein with domain...		Lus10020349 [exp]	10.3	0.8975
AT4G38360		LAZ1	LAZARUS 1, Protein of unknown ...		Lus10003321 [exp]	16.4	0.8885
AT5G14700			NAD(P)-binding Rossmann-fold s...		Lus10022239 [exp]	20.4	0.8549
AT4G32300		SD2-5	S-domain-2 5 (.1)		Lus10002917 [exp]	21.8	0.8762
AT1G78895			Reticulon family protein (.1)		Lus10033352 [exp]	22.7	0.8919
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10016312 [exp]	25.1	0.8236
AT1G78895			Reticulon family protein (.1)		Lus10034807 [exp]	25.7	0.8625
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10033392 [exp]	32.1	0.8786
AT1G12520		ATCCS, CCS1	copper chaperone for SOD1 (.1....		Lus10006686 [exp]	35.9	0.8800

Compare expression of checked genes

Lus10031755 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.