Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06040 177 / 2e-56 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2.3) AT1G70190 105 / 4e-28 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (.1.2) AT4G37660 98 / 8e-26 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1) AT4G36420 89 / 4e-22 Ribosomal protein L12 family protein (.1) AT2G03130 62 / 1e-12 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1) AT3G27850 59 / 5e-11 RPL12-C ribosomal protein L12-C (.1) AT3G27830 59 / 7e-11 RPL12-A ribosomal protein L12-A (.1) AT3G27840 50 / 1e-07 RPL12-B ribosomal protein L12-B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031180 [exp] 318 / 2e-112 AT3G06040 202 / 2e-66 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2.3) Lus10036228 [exp] 105 / 3e-28 AT1G70190 238 / 3e-80 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (.1.2) Lus10038367 [exp] 105 / 4e-28 AT1G70190 243 / 3e-82 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (.1.2) Lus10041783 [exp] 99 / 4e-26 AT4G36420 174 / 5e-56 Ribosomal protein L12 family protein (.1) Lus10023839 [exp] 98 / 1e-25 AT4G37660 155 / 1e-48 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1) Lus10000093 [exp] 98 / 1e-25 AT4G37660 155 / 1e-48 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1) Lus10028336 [exp] 97 / 2e-25 AT4G36420 176 / 1e-56 Ribosomal protein L12 family protein (.1) Lus10021011 [exp] 95 / 2e-24 AT4G37660 157 / 3e-49 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1) Lus10013078 [exp] 64 / 8e-13 AT3G27830 175 / 7e-56 ribosomal protein L12-A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G077200 [exp] 236 / 9e-80 AT3G06040 132 / 3e-39 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2.3) Potri.003G074800 [exp] 111 / 1e-30 AT1G70190 204 / 1e-66 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (.1.2) Potri.004G224300 [exp] 101 / 5e-27 AT4G37660 154 / 4e-48 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1) Potri.007G019100 [exp] 100 / 8e-27 AT4G36420 127 / 2e-37 Ribosomal protein L12 family protein (.1) Potri.001G346100 [exp] 61 / 1e-11 AT3G27830 146 / 1e-44 ribosomal protein L12-A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00542 [flax] [poplar] Ribosomal_L12 Ribosomal protein L7/L12 C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10031756 pacid=23180574 polypeptide=Lus10031756 locus=Lus10031756.g ID=Lus10031756.BGIv1.0 annot-version=v1.0 ATGAAGCTCGTTGCATTGGCAAGATCAGTCCGCTCCTCTCCGGAAGCCATCCGCGAGATCAATGGCTTCTTACAGGTCAGATTTTTTCAGCACGACTTCG TTCCCAGAGACCCGTCGGCGAAACCGAAGAAGTACAAGTATCCCGAAATCTACAATCCGTACGGTCCAAGACCACCTCCATCGGAAAGAATCATTCAGCT CGCCGAGCAAATCGCTGCTCTACCTCTCGACGAGCGGAAGCAAATCGGCCCTGCTCTCGGGTTGAAGCTTAGCCATCCGAAGCTGGAGACGATCTCTACG GAAGGAATGGAGATGGGACCAGTTGGATCGGGAGGTGGATCGGCGGCTGGAAAGGCTGTGGAGGAGAAGAAGGAGAAGACTGCATTCGATGTTAAATTGG AGAAGTTCGATGCAGCTGCGAAGATCAAAGTGATTAAAGAAGTCCGAGCTTTTACGAACTTGGGGTTGAAAGAAGCTAAGGAATTGGTTGAGAAAGCTCC CGTTGTGCTTAAACAAGGAGTCACCAAAGACGAAGGGAACAGTGTCATTGAGAAGATTAAGGCCGCTGGTGGTGTCGCTGTCATGGAGTAA
AA sequence Show only first row Show all	>Lus10031756 pacid=23180574 polypeptide=Lus10031756 locus=Lus10031756.g ID=Lus10031756.BGIv1.0 annot-version=v1.0 MKLVALARSVRSSPEAIREINGFLQVRFFQHDFVPRDPSAKPKKYKYPEIYNPYGPRPPPSERIIQLAEQIAALPLDERKQIGPALGLKLSHPKLETIST EGMEMGPVGSGGGSAAGKAVEEKKEKTAFDVKLEKFDAAAKIKVIKEVRAFTNLGLKEAKELVEKAPVVLKQGVTKDEGNSVIEKIKAAGGVAVME

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06040			Ribosomal protein L12/ ATP-dep...		Lus10031756 [exp]	0	1
AT4G23620			Ribosomal protein L25/Gln-tRNA...		Lus10000590 [exp]	3.2	0.9074
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Lus10011902 [exp]	9.9	0.8490
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Lus10007579 [exp]	10.7	0.8689
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10017852 [exp]	13.0	0.8685
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10007619 [exp]	18.4	0.8808
AT1G23100			GroES-like family protein (.1)		Lus10036055 [exp]	20.6	0.8500
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Lus10021027 [exp]	21.0	0.8391
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10018588 [exp]	21.2	0.8584
AT1G30580			GTP binding (.1)		Lus10038543 [exp]	21.5	0.8552
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10035859 [exp]	30.0	0.7909

Compare expression of checked genes

Lus10031756 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.