Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010518 [exp] 129 / 8e-38 ND / Lus10008146 [exp] 122 / 1e-34 ND / Lus10040056 [exp] 115 / 7e-33 AT5G28823 41 / 2e-04 unknown protein Lus10026443 [exp] 101 / 6e-27 ND / Lus10001095 [exp] 85 / 8e-21 ND 38 / 0.002 Lus10035002 [exp] 81 / 1e-19 AT2G01050 39 / 0.001 zinc ion binding;nucleic acid binding (.1) Lus10040594 [exp] 67 / 1e-13 ND / Lus10004792 [exp] 67 / 2e-13 ND / Lus10007392 [exp] 57 / 2e-10 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G002800 [exp] 39 / 0.0007 AT2G01050 68 / 2e-12 zinc ion binding;nucleic acid binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031757 pacid=23180630 polypeptide=Lus10031757 locus=Lus10031757.g ID=Lus10031757.BGIv1.0 annot-version=v1.0 ATGGTCGGTGCTCTTCCCTACACTCCGCACGTGTCTTCTCCTTTTCTGCCTGTTCCTGGGTCCGTGGTTGGCATGGATCTTGAATCCGGAGATCTGTCGG CGAAGGGACCAGCGGTGTACTCCTCCTCTTCTCTGGCCGGATCCAGTTTGGTGAAGGGACCTCATCCCCAAGCTGAGCGGGAGGGGTTCTTCTTGATTGA ACTCCCTTCAGTGAAATTCTGTGAATGGATCCTGGCTCGAGCTTGGCACATCCACCATTCGGTGTTGGTCCTCCGTCGCTGGAAGGAGGATATTCAGTCG ATGGACTTGGAGGTGCAAGAGGTGCCTACTTGGATCACTCTCACAGGTGTCCCACCCCATATGGTTACAGAAGATGGACTTGGGTGGATCATTAGTCGAT GGGGTAAACCTCTCAACAAATACGTTCCAGATGGTTTGGTTGTTAAGCTCTGTATCCTCCTTGCTAAGAATAAGACTTGCCCTGACTCTATTGATATTTG TGTGAATGGTATCAATGCGCATATCACTGTGGCTGCTCAACTGTACACTGTAAATCTGTAA
AA sequence Show only first row Show all	>Lus10031757 pacid=23180630 polypeptide=Lus10031757 locus=Lus10031757.g ID=Lus10031757.BGIv1.0 annot-version=v1.0 MVGALPYTPHVSSPFLPVPGSVVGMDLESGDLSAKGPAVYSSSSLAGSSLVKGPHPQAEREGFFLIELPSVKFCEWILARAWHIHHSVLVLRRWKEDIQS MDLEVQEVPTWITLTGVPPHMVTEDGLGWIISRWGKPLNKYVPDGLVVKLCILLAKNKTCPDSIDICVNGINAHITVAAQLYTVNL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10031757 [exp]	0	1
AT2G46620			P-loop containing nucleoside t...		Lus10005991 [exp]	5.8	0.8133
AT4G29680			Alkaline-phosphatase-like fami...		Lus10008562 [exp]	6.8	0.8153
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10029231 [exp]	8.8	0.8099
AT2G05830			NagB/RpiA/CoA transferase-like...		Lus10001970 [exp]	9.7	0.7994
AT2G39050		ArathEULS3	Euonymus lectin S3, hydroxypro...		Lus10006551 [exp]	11.8	0.8080
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10029955 [exp]	14.7	0.7953
AT1G07890		ATAPX01, CS1, A...	maternal effect embryo arrest ...		Lus10015970 [exp]	16.3	0.7915
AT1G55915			zinc ion binding (.1)		Lus10037337 [exp]	17.7	0.7759
AT3G04580		EIN4	ETHYLENE INSENSITIVE 4, Signal...		Lus10005517 [exp]	21.1	0.6787
AT2G33700			Protein phosphatase 2C family ...		Lus10030731 [exp]	22.2	0.7711

Compare expression of checked genes

Lus10031757 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.