Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18660 107 / 2e-30 AtPNP-A, PNP-A, EXLB3 plant natriuretic peptide A (.1) AT4G30380 86 / 3e-22 EXLB2 Barwin-related endoglucanase (.1) AT4G38210 45 / 7e-06 ATHEXPALPHA1.23, ATEXP20, ATEXPA20 EXPANSIN 20, expansin A20 (.1) AT1G62980 45 / 7e-06 ATHEXPALPHA1.25, ATEXP18, ATEXPA18 EXPANSIN 18, expansin A18 (.1) AT2G03090 40 / 0.0002 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT4G17030 39 / 0.0004 ATHEXPBETA3.1, ATEXPR1, AT-EXPR, ATEXLB1 expansin-like B1 (.1) AT5G39260 39 / 0.0007 ATHEXPALPHA1.20, ATEXP21, ATEXPA21 EXPANSIN 21, expansin A21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031760 [exp] 112 / 8e-33 AT4G30380 72 / 1e-17 Barwin-related endoglucanase (.1) Lus10019978 [exp] 99 / 6e-27 AT4G30380 162 / 8e-53 Barwin-related endoglucanase (.1) Lus10042435 [exp] 79 / 6e-19 AT4G30380 101 / 2e-28 Barwin-related endoglucanase (.1) Lus10026929 [exp] 67 / 8e-15 AT2G18660 53 / 1e-09 plant natriuretic peptide A (.1) Lus10026931 [exp] 69 / 2e-14 AT4G30380 64 / 9e-13 Barwin-related endoglucanase (.1) Lus10026232 [exp] 65 / 2e-13 AT4G30380 90 / 2e-23 Barwin-related endoglucanase (.1) Lus10030078 [exp] 62 / 9e-13 AT2G18660 84 / 3e-21 plant natriuretic peptide A (.1) Lus10042436 [exp] 59 / 7e-12 AT2G18660 53 / 2e-10 plant natriuretic peptide A (.1) Lus10026930 [exp] 60 / 3e-11 AT2G18660 69 / 6e-15 plant natriuretic peptide A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G179300 [exp] 125 / 2e-37 AT2G18660 116 / 1e-34 plant natriuretic peptide A (.1) Potri.018G101600 [exp] 123 / 8e-37 AT2G18660 113 / 3e-33 plant natriuretic peptide A (.1) Potri.018G098200 [exp] 99 / 5e-27 AT4G30380 122 / 5e-37 Barwin-related endoglucanase (.1) Potri.006G176300 [exp] 96 / 3e-26 AT4G30380 165 / 6e-54 Barwin-related endoglucanase (.1) Potri.003G218300 [exp] 92 / 2e-24 AT4G30380 86 / 2e-22 Barwin-related endoglucanase (.1) Potri.006G252200 [exp] 65 / 4e-14 AT2G18660 91 / 2e-24 plant natriuretic peptide A (.1) Potri.018G029100 [exp] 65 / 5e-14 AT2G18660 94 / 2e-25 plant natriuretic peptide A (.1) Potri.006G155000 [exp] 50 / 4e-08 AT2G18660 59 / 1e-11 plant natriuretic peptide A (.1) Potri.006G249500 [exp] 47 / 5e-07 AT4G30380 61 / 1e-12 Barwin-related endoglucanase (.1) Potri.018G031901 [exp] 45 / 1e-06 AT4G30380 57 / 3e-11 Barwin-related endoglucanase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10031759 pacid=23180782 polypeptide=Lus10031759 locus=Lus10031759.g ID=Lus10031759.BGIv1.0 annot-version=v1.0 ATGGAACACAAGCTAGCACTGATCGCAACAACAACAATGGTGGTTTTGGTCATGCTCTGCTCTCTTCCGAACCCTTCGGAAGCTGACCAAGGCCTCGCCG TCTTCCACGACAAATACACACCTTCGGCCTGCTACGGGGGACAGAACAGGGGGGACATGATAACAGGGGTGAGCGACAAGCTGTGGAACAGAGGCGGAGC TTGTGGGACGAGATACAGAGTTAGATGCATTGGGCGGGCGAATACAGCCCCCAACGCTTGCAAAACCACCACCGGAGCTGTTATAGTCACCGTCACCGAC TACTGCAAAGAATGCACCGGCGACATCAACCTCTCCAGGGCTGCTTTCGCCAGGATTGCCAACATCGACGCCGGCAAAGTCCGGGTGGCATACGACCAGT TTTCGAGATCGATCGACTTCGGAGTTGAGATGATGCTGATGGTGTACAAGAATAAGAGAGATTGGAGAAATAACTAG
AA sequence Show only first row Show all	>Lus10031759 pacid=23180782 polypeptide=Lus10031759 locus=Lus10031759.g ID=Lus10031759.BGIv1.0 annot-version=v1.0 MEHKLALIATTTMVVLVMLCSLPNPSEADQGLAVFHDKYTPSACYGGQNRGDMITGVSDKLWNRGGACGTRYRVRCIGRANTAPNACKTTTGAVIVTVTD YCKECTGDINLSRAAFARIANIDAGKVRVAYDQFSRSIDFGVEMMLMVYKNKRDWRNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10031759 [exp]	0	1
AT1G68460		ATIPT1	Arabidopsis thaliana isopenten...		Lus10034334 [exp]	6.9	0.6515
AT1G01490			Heavy metal transport/detoxifi...		Lus10039285 [exp]	16.3	0.6500
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Lus10032844 [exp]	22.1	0.6482
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10024367 [exp]	23.5	0.6057
AT5G09220		AAP2	amino acid permease 2 (.1)		Lus10027109 [exp]	25.5	0.5737
AT1G17800		AtENODL22	early nodulin-like protein 22 ...		Lus10020984 [exp]	26.6	0.6224
					Lus10003448 [exp]	31.0	0.6306
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10013150 [exp]	41.0	0.6348
AT2G25720			unknown protein		Lus10042976 [exp]	58.6	0.6217
AT3G07600			Heavy metal transport/detoxifi...		Lus10016060 [exp]	59.1	0.5956

Compare expression of checked genes

Lus10031759 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.