Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60990 655 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT1G16280 340 / 1e-112 SWA3, AtRH36 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) AT4G16630 272 / 3e-83 DEA(D/H)-box RNA helicase family protein (.1) AT3G18600 249 / 2e-76 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G65900 249 / 4e-76 DEA(D/H)-box RNA helicase family protein (.1) AT2G33730 242 / 2e-72 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G55150 228 / 3e-69 DEA(D/H)-box RNA helicase family protein (.1) AT5G63120 229 / 1e-68 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G61240 227 / 1e-68 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT1G71370 227 / 3e-68 DEA(D/H)-box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031182 [exp] 826 / 0 AT5G60990 674 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10006326 [exp] 367 / 9e-122 AT1G16280 673 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10029596 [exp] 366 / 3e-121 AT1G16280 674 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10042754 [exp] 262 / 2e-79 AT1G16280 983 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10028644 [exp] 251 / 4e-75 AT1G77030 1057 / 0.0 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) Lus10018941 [exp] 249 / 2e-74 AT1G77030 1043 / 0.0 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) Lus10030075 [exp] 239 / 3e-72 AT3G58570 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027240 [exp] 239 / 3e-72 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009616 [exp] 238 / 8e-72 AT3G18600 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G068800 [exp] 706 / 0 AT5G60990 656 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.006G249100 [exp] 658 / 0 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.016G013900 [exp] 592 / 0 AT5G60990 579 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.008G084700 [exp] 350 / 2e-116 AT1G16280 616 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Potri.005G241300 [exp] 266 / 3e-81 AT4G16630 829 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.005G185900 [exp] 243 / 1e-72 AT1G77030 1106 / 0.0 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) Potri.012G045800 [exp] 239 / 2e-71 AT2G33730 994 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G250700 [exp] 235 / 7e-71 AT3G18600 740 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G045300 [exp] 234 / 8e-71 AT3G18600 747 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G038300 [exp] 232 / 1e-70 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10031761 pacid=23180575 polypeptide=Lus10031761 locus=Lus10031761.g ID=Lus10031761.BGIv1.0 annot-version=v1.0 ATGGCGGAAGAAGCTGAAGAAGTGAAGACGTTCACAGAGTTGGGGATATGCGAAGATTTGGTGAAGGCCTGCGATGCGCTGGGATGGAAAGCCCCTACGA AGATACAAGTGGAGTCAATCCCGCACGCGCTCGAAGGCAAAGACGTGATTGCCCTGGCACAAACAGGTTCGGGGAAAACTGGCGCGTTCGCGCTCCCAAT AATCCAGTCGCTTCTCACCGAGTCCTCGAAGCAGAAGTCGATCATGGCATTCTTTGCTTGCGTGCTATCTCCCACAAGGGAGCTGGCGATTCAGATAGCT GAGCAGTTCGAAGCTCTGGGGTCTGCTATTGGTGTCAAATGTGCAGTCCTCGTTGGTGGGATAGATATGATTCAGCAAGCTGCTGCTCTTGGAAAGAGGC CTCACATTGTGGTTGGGACACCTGGGCGGCTTATGGATCATCTCAAAAACACAAAAGGGTTCTCTCTTCGCACATTGAAGTACTTGGTATTGGATGAAGC TGACAGGTTGCTGAATGAGGACTTTGAGAAATCTCTAGATGAAATTCTGAGCTCTATACCAACAGACCGGAAAACTTACTTGTTTTCTGCAACCATGACT AAAAAGGTGAAGAAACTTCAGAGGGCTTGTTTAAAGAATCCTGTCAAGATAGAGGCAGCATCTAAATACTCCACAGTTGATACATTAAAGCAGCAATATT TTTTCATTCCAGCCAAGCACAAGGATTGCTATCTCGTGTACATTCTGACCGAAATGTCAGGAAGCACTTCCATGGTATTCACTCGAACATGTGATGCAAC AACATTGTTGGCTTCGGTTCTTCGGAATTTGGGTCTAAGGGCCATCCCGATCAATGGGCACATGACACAGTCAAAGAGACTTGGAGCCTTGAACAAGTTT AAAGCCGGAGAATGCAGCATTCTTATATGCACTGATGTGGCGAGTAGAGGACTGGATATTCCGTCCGTGGATATGGTTATTAATTATGACATTCCTTCCA ACTCAAAGGACTACATCCATCGCGTGGGGAGAACTGCTCGTGCTGGTCGTTCTGGTGTTGCAATCTCGCTGGTGAATCAGTACGAACTCGAGTGGTTTAT ACAGATAGAGAAGCTTATCGGTAGGAAACTGGAAGAGTTTCCTGCTGACAAAGAGGAAGTACTAATGTTGCTAGAAAGAGTCACGGAAGCCAAGAGGATT TCCCAAACGAAATTGAAAGAGGAAGGAGGCAACAGGAAGAGGAGGGGTGGAGGAGGAGATGATGACCAAGACGATGAAGTTAGCAGATATTTAGGTGGTG GCAAACATGACAAGAAGTCCAACAACAAATTTAAGAAGAATAAAAGAGGATGA
AA sequence Show only first row Show all	>Lus10031761 pacid=23180575 polypeptide=Lus10031761 locus=Lus10031761.g ID=Lus10031761.BGIv1.0 annot-version=v1.0 MAEEAEEVKTFTELGICEDLVKACDALGWKAPTKIQVESIPHALEGKDVIALAQTGSGKTGAFALPIIQSLLTESSKQKSIMAFFACVLSPTRELAIQIA EQFEALGSAIGVKCAVLVGGIDMIQQAAALGKRPHIVVGTPGRLMDHLKNTKGFSLRTLKYLVLDEADRLLNEDFEKSLDEILSSIPTDRKTYLFSATMT KKVKKLQRACLKNPVKIEAASKYSTVDTLKQQYFFIPAKHKDCYLVYILTEMSGSTSMVFTRTCDATTLLASVLRNLGLRAIPINGHMTQSKRLGALNKF KAGECSILICTDVASRGLDIPSVDMVINYDIPSNSKDYIHRVGRTARAGRSGVAISLVNQYELEWFIQIEKLIGRKLEEFPADKEEVLMLLERVTEAKRI SQTKLKEEGGNRKRRGGGGDDDQDDEVSRYLGGGKHDKKSNNKFKKNKRG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60990			DEA(D/H)-box RNA helicase fami...		Lus10031761 [exp]	0	1
AT5G37530			NAD(P)-binding Rossmann-fold s...		Lus10002651 [exp]	1.4	0.9622
AT5G08610		PDE340	PIGMENT DEFECTIVE 340, P-loop ...		Lus10012633 [exp]	1.7	0.9605
AT5G27120			NOP56-like pre RNA processing ...		Lus10004143 [exp]	2.2	0.9647
AT5G20890			TCP-1/cpn60 chaperonin family ...		Lus10012380 [exp]	3.5	0.9561
AT5G60990			DEA(D/H)-box RNA helicase fami...		Lus10031182 [exp]	4.9	0.9443
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10027818 [exp]	7.3	0.9538
AT1G19880			Regulator of chromosome conden...		Lus10033168 [exp]	7.5	0.9501
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Lus10027503 [exp]	8.8	0.9448
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10040626 [exp]	9.5	0.9540
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10002851 [exp]	10.4	0.9470

Compare expression of checked genes

Lus10031761 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.