Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79220 353 / 3e-120 Mitochondrial transcription termination factor family protein (.1) AT5G55580 61 / 5e-10 Mitochondrial transcription termination factor family protein (.1) AT5G64950 61 / 7e-10 Mitochondrial transcription termination factor family protein (.1) AT1G61990 60 / 1e-09 Mitochondrial transcription termination factor family protein (.1) AT2G21710 58 / 5e-09 EMB2219 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) AT4G38160 48 / 6e-06 PDE191 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) AT4G02990 47 / 2e-05 RUG2, BSM RUGOSA 2, BELAYA SMERT, Mitochondrial transcription termination factor family protein (.1) AT1G62110 46 / 2e-05 Mitochondrial transcription termination factor family protein (.1) AT2G03050 42 / 0.0003 SOLDAT10, EMB93 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) AT4G14605 42 / 0.0008 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031184 [exp] 737 / 0 AT1G79220 354 / 2e-120 Mitochondrial transcription termination factor family protein (.1) Lus10008688 [exp] 100 / 4e-23 AT5G07900 197 / 2e-59 Mitochondrial transcription termination factor family protein (.1) Lus10040817 [exp] 81 / 1e-16 AT5G07900 225 / 6e-70 Mitochondrial transcription termination factor family protein (.1) Lus10016550 [exp] 74 / 2e-14 AT5G07900 219 / 9e-68 Mitochondrial transcription termination factor family protein (.1) Lus10004329 [exp] 71 / 4e-13 AT5G64950 238 / 2e-75 Mitochondrial transcription termination factor family protein (.1) Lus10028912 [exp] 62 / 2e-10 AT5G64950 249 / 1e-79 Mitochondrial transcription termination factor family protein (.1) Lus10003775 [exp] 60 / 1e-09 AT5G55580 546 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10029199 [exp] 59 / 2e-09 AT5G64950 226 / 1e-70 Mitochondrial transcription termination factor family protein (.1) Lus10013854 [exp] 55 / 4e-08 AT4G38160 446 / 2e-158 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G069100 [exp] 440 / 2e-154 AT1G79220 390 / 2e-134 Mitochondrial transcription termination factor family protein (.1) Potri.001G034700 [exp] 94 / 4e-21 AT5G07900 202 / 2e-61 Mitochondrial transcription termination factor family protein (.1) Potri.004G012900 [exp] 92 / 2e-20 AT5G07900 220 / 6e-68 Mitochondrial transcription termination factor family protein (.1) Potri.001G035000 [exp] 92 / 2e-20 AT5G07900 209 / 7e-64 Mitochondrial transcription termination factor family protein (.1) Potri.004G012400 [exp] 90 / 1e-19 AT5G07900 212 / 9e-65 Mitochondrial transcription termination factor family protein (.1) Potri.004G013000 [exp] 86 / 3e-18 AT5G07900 193 / 1e-57 Mitochondrial transcription termination factor family protein (.1) Potri.015G038500 [exp] 86 / 3e-18 AT5G07900 218 / 2e-67 Mitochondrial transcription termination factor family protein (.1) Potri.004G013100 [exp] 84 / 1e-17 AT5G07900 198 / 1e-59 Mitochondrial transcription termination factor family protein (.1) Potri.003G190300 [exp] 84 / 2e-17 AT5G07900 209 / 8e-64 Mitochondrial transcription termination factor family protein (.1) Potri.003G190400 [exp] 81 / 9e-17 AT5G07900 206 / 9e-63 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10031762 pacid=23180742 polypeptide=Lus10031762 locus=Lus10031762.g ID=Lus10031762.BGIv1.0 annot-version=v1.0 ATGAAACTAAACCGCTTTCTACGTTCTGGAATCTTCGGTGGGTCGACAGCTCCGCGACGGTTTATCTGTTTGAGCAGAAATGTACTCGAAAGTGCCTCCG ATCCCTGCGTCTCCAGCACACCCGCCACCTGTTCGACGATATGCCAAGCCGAAGTGGAAGAAGCTCCCAAGAACTCATTCGAGGTTTTCAAGAGATGGGG ATGCTCCGAGACTGATTTGGCCAAGATATACACCCGCAGGCCGGCTCTCCGAAATGCTGGCGTCCCACTCTTACAGTTCAAATTGAATGTACTCCAGAAC TTGGGTCTGAAAGCTCCAGACCTTGTCCAGATCATCAACTGCCGCCCTCATTTCCTAAGCTACCGAATGACTGGCTATTTCGACGAGCATATGGAATACT TCCTGGAGTTGTTCGGAACCAAAGAATTAGTACTCAAAGCCATCGTCAGGAATCCTTCCCTGTTAAGGTACGATTTGCAGAACAAGATCAAACCTGTTGT TGCATTGTATGAATCTATGGGCATTACCAAACAGAATTTTGCCAAAATGCTACTGTGTCGTCCTGCTTTGATCGCTAGAACTTGTTTTGACGATGAGAAA ATGGAATGCATACGTAAAACTGGGATTTCATCAAGCTCCAAGCTTTACAAATACGTGATTACCATCATAGGCATCTCGAAAACGGAAACTCTGTTAGGAA AAGTGGCGAACTTAGAGAAGTTCGGGTTTTCGGAAGAGGAGGTATGGAGTCTAGTCGGGCGTTCGCCTTACTTGTTGACATTAGCCATTGATAAAGTTCA GAGGAACATGACGTATGTTGTGGGAACAATGAAGCTTCCTGCAAGTGTGGTTCTGAAGCACCCGTTCTTGCTGTATTCGAATCTCGAGACCGTGTTGAAG CCTCGTGTAATACTTGCGGGGAAATTGGAGGAGATGGGGCTTTCCCCTAAGATAGGAGGAGTGGCTAACGTGATAAGGGCGATGAATATGAGCGAAAAGA GGGTGATCGAGGCGTATATTTCGTGTCATCCTGAGGATGTTGCTGATGAGTTGATGGCTTGTTATGAGAAGGCGAAAGGGCTCAAGAGATTAGCTCAGGC CTCAAAGAAGTCGGTCTTTGAGAGGTTTCCGTTTTGA
AA sequence Show only first row Show all	>Lus10031762 pacid=23180742 polypeptide=Lus10031762 locus=Lus10031762.g ID=Lus10031762.BGIv1.0 annot-version=v1.0 MKLNRFLRSGIFGGSTAPRRFICLSRNVLESASDPCVSSTPATCSTICQAEVEEAPKNSFEVFKRWGCSETDLAKIYTRRPALRNAGVPLLQFKLNVLQN LGLKAPDLVQIINCRPHFLSYRMTGYFDEHMEYFLELFGTKELVLKAIVRNPSLLRYDLQNKIKPVVALYESMGITKQNFAKMLLCRPALIARTCFDDEK MECIRKTGISSSSKLYKYVITIIGISKTETLLGKVANLEKFGFSEEEVWSLVGRSPYLLTLAIDKVQRNMTYVVGTMKLPASVVLKHPFLLYSNLETVLK PRVILAGKLEEMGLSPKIGGVANVIRAMNMSEKRVIEAYISCHPEDVADELMACYEKAKGLKRLAQASKKSVFERFPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79220			Mitochondrial transcription te...		Lus10031762 [exp]	0	1
AT4G28210		EMB1923	embryo defective 1923 (.1)		Lus10033723 [exp]	2.8	0.9118
AT5G28460			Pentatricopeptide repeat (PPR)...		Lus10018279 [exp]	3.0	0.8671
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10027408 [exp]	3.0	0.8948
AT3G02010			Pentatricopeptide repeat (PPR)...		Lus10035164 [exp]	4.9	0.8823
AT3G56550			Pentatricopeptide repeat (PPR)...		Lus10041327 [exp]	7.1	0.8321
AT1G69350			Tetratricopeptide repeat (TPR)...		Lus10030415 [exp]	8.0	0.8751
AT1G29900		VEN3, CARB	VENOSA 3, carbamoyl phosphate ...		Lus10016137 [exp]	12.3	0.8948
AT3G16610			pentatricopeptide (PPR) repeat...		Lus10035788 [exp]	14.7	0.8510
AT1G03530		ATNAF1	nuclear assembly factor 1 (.1)		Lus10024956 [exp]	14.7	0.8654
AT5G04520			Protein of unknown function DU...		Lus10028831 [exp]	16.5	0.8840

Compare expression of checked genes

Lus10031762 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.