Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56070 1354 / 0 LOS1, AT1G56075.1 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT3G12915 1253 / 0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT1G06220 452 / 1e-145 GFA1, CLO, MEE5 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT5G25230 448 / 4e-144 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT3G22980 314 / 3e-93 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT5G39900 96 / 3e-20 Small GTP-binding protein (.1) AT5G13650 95 / 5e-20 SVR3 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) AT2G31060 87 / 1e-17 EMB2785 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) AT5G08650 85 / 7e-17 Small GTP-binding protein (.1) AT1G45332 75 / 1e-13 Translation elongation factor EFG/EF2 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031201 [exp] 1413 / 0 AT1G56070 1415 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031779 [exp] 712 / 0 AT3G12915 760 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10031186 [exp] 676 / 0 AT1G56070 902 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031185 [exp] 491 / 7e-170 AT1G56070 504 / 6e-175 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031129 [exp] 453 / 8e-146 AT1G06220 1751 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10034111 [exp] 447 / 2e-143 AT1G06220 1761 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10004749 [exp] 328 / 1e-98 AT3G22980 1376 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10043478 [exp] 204 / 1e-58 AT1G06220 729 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10043477 [exp] 200 / 7e-56 AT1G06220 828 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G065700 [exp] 1368 / 0 AT1G56070 1623 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.007G065600 [exp] 1367 / 0 AT1G56070 1620 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.005G098100 [exp] 1366 / 0 AT1G56070 1648 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.018G114900 [exp] 462 / 4e-149 AT1G06220 1710 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Potri.006G190600 [exp] 457 / 1e-147 AT1G06220 1744 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Potri.009G152500 [exp] 331 / 2e-99 AT3G22980 1521 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.017G079800 [exp] 90 / 2e-18 AT5G39900 999 / 0.0 Small GTP-binding protein (.1) Potri.006G053000 [exp] 88 / 1e-17 AT5G13650 1123 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Potri.001G305300 [exp] 87 / 3e-17 AT5G08650 1063 / 0.0 Small GTP-binding protein (.1) Potri.013G123700 [exp] 84 / 2e-16 AT2G31060 1084 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0575 [flax] [poplar] EFTPs PF03144 [flax] [poplar] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0329 [flax] [poplar] S5 PF03764 [flax] [poplar] EFG_IV Elongation factor G, domain IV CL0023 [flax] [poplar] P-loop_NTPase PF00009 [flax] [poplar] GTP_EFTU Elongation factor Tu GTP binding domain
Representative CDS sequence Show only first row Show all	>Lus10031763 pacid=23180665 polypeptide=Lus10031763 locus=Lus10031763.g ID=Lus10031763.BGIv1.0 annot-version=v1.0 ATGGTGAAGTTCACAGCTGAGGAGCTTCGGCGCATTATGGACTACAAGCACAACATCCGTAATATGTCTGTCATTGCCCATGTCGATCATGGGAAATCTA CACTTACCGATTCTCTAGTGGCTGCTGCGGGTATTATTGCCCAGGAGGTTGCTGGGGATGTGCGGATGACAGATACCCGTGCTGATGAAGCTGAGCGTGG TATTACAATCAAGTCCACTGGAATCTCTCTTTTCTATGAGATGACTGATGAGAGCATCAAGAGTTTCACGGGAAAGAGGGATGGGAACGAGTACCTTATC AATCTTATCGATTCCCCTGGACACGTTGACTTCTCGTCTGAGGTCACTGCTGCTCTTCGAATTACTGATGGTGCTCTTGTGGTCGTGGATTGTGTTGAGG GTGTCTGCGTGCAGACTGAGACTGTTCTACGTCAAGCTTTGGGTGAAAGGATCAGGCCTGTGCTAACAGTGAACAAGATGGACAGGTGTTTCCTTGAGCT CCAGGTTGATGGAGAGGAAGCCTACCAGACATTCCAGAGGGTTATTGAGAATGCTAATGTCATCATGGCAACTTATGAAGATCCTCTTCTCGGTGATGTT CAGGTGTACCCAGAGAAAGGAACTGTTGCTTTTTCTGCTGGTCTCCATGGTTGGGCTTTTACATTGACTAACTTTGCCAAGATGTATGCATCCAAGTTTG GAGTTGATGAGGCCAAGATGATGGAAAGGCTGTGGGGTGAGAACTTCTTTGACCCTGCCACTAAGAAGTGGACAACCAAGAACACCGGTTCTGCTACTTG CAAACTGGACGAGGCCAAGATGATGGAAAGGCTGTGGGGTGAGAACTTCTTTGACCCTGCCACTAAGAAGTGGACAACCAAGAACACCGGTTCTGCTACT TGCAAACGTGGGTTTGTGCAGTTCTGTTACGAGCCGATCAAGCAGATCATCAACACCTGTATGGCCGACCAGAAGGACAAACTGTGGCCCATGTTGAAAA AGCTTAATGTTACAATGAAGGGTGAAGAGAAGGACTTGATGGGCAAGGCTTTGATGAAGCGTGTCATGCAAACCTGGCTTCCAGCTGCAGATGCTCTCCT AGAAATGATGATCTTTCACCTTCCGTCTCCTGCTACTGCCCAGAAGTACCGTGTGGAGAACTTGTATGAGGGTCCACTTGATGATCAGTATGCTAATGCC ATCAGGAACTGTGACCCCGATGGCCCCCTCATGCTTTATGTATCCAAGATGATTCCCGCTTCTGACAAGGGTAGGTTCTTTGCCTTTGGTCGTGTCTTTG CTGGTAAGGTATCTACCGGTGTGAAGGTGAGGATTATGGGTCCCAACTACGTCCCTGGTGAGAAGAAGGATCTGTATGTGAAGAATGTCCAGAGAACTGT TATCTGGATGGGTAAGAGGCAGGAGACCGTGGAGGATGTTCCTTGTGGTAACACCGTTGCTTTGGTTGGTTTGGATCAATTCATCACAAAGAATGCCACT TTGACCAACGAGAAGGAAGTTGATGCTCACCCAATCCGTGCAATGAAGTTCTCAGTCTCCCCTGTTGTTCGTGTTGCTGTTCAGTGCAAGGTTGCTTCTG ATCTACCCAAGTTGGTGGAAGGTTTGAAGCGTCTGGCCAAGTCTGACCCCATGGTTGTGTGTAGTATTGAGGAGTCTGGTGAGCACATCATTGCTGGTGC TGGAGAGCTTCACCTTGAAATCTGTTTGAAGGATCTTGTGGATGACTTCATGGGTGGTGCTGAGATCACGAAATCCGACCCAGTTGTGTCCTTCCGTGAA ACCGTCCTTGAGAAATCAAGCAGAGTCGTCATGAGCAAGTCCCCCAACAAGCATAACCGTCTCTACATGGAGGCCAGACCATTGGAGGAAGGTTTAGCCG AGGCAATCGATGACGGGCGCATTGGCCCAAGGGATGACCCCAAAGTCCGTTCCAAGATCCTCTCTGAGGAGTTTGGCTGGGACAAGGATCTTGCCAAGAA GATCTGGTGCTTCGGCCCTGAGACCACCGGCCCCAACATGGTAGTAGACATGTGTAAGGGAGTTCAGTACCTGAATGAAATCAAGGATTCAGTCGTGGCT GGGTTCCAGTGGGCATCAAAGGAAGGTGCGCTTGCAGAAGAAAACATGAGAGGAATCTGCTTCGAAGTCTGTGATGTGGTTCTCCACGCCGATGCTATCC ACAGAGGTGGTGGTCAAGTCATCCCAACAGCCAGGAGGGTCATCTACGCTTCCCAGCTGACTGCCAAGCCAAGGCTGCTCGAGCCAATCTTGTCTATCTC GTCGAGATCCAGGCCCCAGAACAAGCGCTCGGAGGTATCTACAGTGTGCTGA
AA sequence Show only first row Show all	>Lus10031763 pacid=23180665 polypeptide=Lus10031763 locus=Lus10031763.g ID=Lus10031763.BGIv1.0 annot-version=v1.0 MVKFTAEELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLFYEMTDESIKSFTGKRDGNEYLI NLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDV QVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDEAKMMERLWGENFFDPATKKWTTKNTGSATCKLDEAKMMERLWGENFFDPATKKWTTKNTGSAT CKRGFVQFCYEPIKQIINTCMADQKDKLWPMLKKLNVTMKGEEKDLMGKALMKRVMQTWLPAADALLEMMIFHLPSPATAQKYRVENLYEGPLDDQYANA IRNCDPDGPLMLYVSKMIPASDKGRFFAFGRVFAGKVSTGVKVRIMGPNYVPGEKKDLYVKNVQRTVIWMGKRQETVEDVPCGNTVALVGLDQFITKNAT LTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSIEESGEHIIAGAGELHLEICLKDLVDDFMGGAEITKSDPVVSFRE TVLEKSSRVVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVA GFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPILSISSRSRPQNKRSEVSTVC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031763 [exp]	0	1
AT3G02650			Tetratricopeptide repeat (TPR)...		Lus10013236 [exp]	1.0	0.9773
AT1G09620			ATP binding;leucine-tRNA ligas...		Lus10024704 [exp]	1.4	0.9629
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Lus10010782 [exp]	1.7	0.9603
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031186 [exp]	4.5	0.9570
AT3G09630			Ribosomal protein L4/L1 family...		Lus10019903 [exp]	4.7	0.9488
AT1G19520		NFD5	NUCLEAR FUSION DEFECTIVE 5, pe...		Lus10035298 [exp]	5.5	0.9502
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10015204 [exp]	5.5	0.9528
AT3G56150		ATTIF3C1, ATEIF...	eukaryotic translation initiat...		Lus10027702 [exp]	8.4	0.9520
AT3G09630			Ribosomal protein L4/L1 family...		Lus10026476 [exp]	8.5	0.9600
AT1G61580		RPL3B, ARP2	ARABIDOPSIS RIBOSOMAL PROTEIN ...		Lus10037360 [exp]	8.5	0.9515

Compare expression of checked genes

Lus10031763 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.