Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56070 156 / 2e-45 LOS1, AT1G56075.1 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT3G12915 151 / 1e-43 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT1G06220 77 / 3e-17 GFA1, CLO, MEE5 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT5G25230 77 / 3e-17 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT3G22980 60 / 3e-11 Ribosomal protein S5/Elongation factor G/III/V family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031186 [exp] 167 / 9e-51 AT1G56070 902 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031779 [exp] 167 / 3e-49 AT3G12915 760 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10043478 [exp] 75 / 1e-16 AT1G06220 729 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10034111 [exp] 75 / 2e-16 AT1G06220 1761 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10031129 [exp] 75 / 2e-16 AT1G06220 1751 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10004749 [exp] 55 / 1e-09 AT3G22980 1376 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G098100 [exp] 156 / 3e-45 AT1G56070 1648 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.007G065700 [exp] 154 / 1e-44 AT1G56070 1623 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.007G065600 [exp] 153 / 5e-44 AT1G56070 1620 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.018G114900 [exp] 76 / 7e-17 AT1G06220 1710 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Potri.006G190600 [exp] 76 / 7e-17 AT1G06220 1744 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Potri.002G176966 [exp] 52 / 2e-09 AT1G56070 119 / 6e-10 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.009G152500 [exp] 54 / 3e-09 AT3G22980 1521 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0437 [flax] [poplar] EF-G_C PF00679 [flax] [poplar] EFG_C Elongation factor G C-terminus
Representative CDS sequence Show only first row Show all	>Lus10031764 pacid=23180593 polypeptide=Lus10031764 locus=Lus10031764.g ID=Lus10031764.BGIv1.0 annot-version=v1.0 ATGCAGAGGCCCGGTACCCCACTCTACAACATCAAGGCCTACCTTCCTGTGGTCGAGTCCTTTGGATTCTCGAGCACATTGAGGGCAGCTACATCTGGGC AGGCGTTCCCACAGTGCGTGTTTGATCATTGGGAGATGATGATGTCCGATCCTTTGGAGGCTGGCACCCAGGCTTCCACTCTCGTTGCGGAGATCCGTAA GAGGAAGGGTTTGAAGGAGCAGATGACCCCCCTCTCCCGATTTCGAGGACAAGCTGTAAGCAACCGAGGCAGGAGCTGGGATGGAAGCAAAGCATGTAAT GGAGCACGGGTAGGAGAAGAAAGCTTCTTATTATGTTTTACTCAGCAGTTTCAAATTTTTGTCGCTTCGTGGTTGAATTGTGATATTGAGTAG
AA sequence Show only first row Show all	>Lus10031764 pacid=23180593 polypeptide=Lus10031764 locus=Lus10031764.g ID=Lus10031764.BGIv1.0 annot-version=v1.0 MQRPGTPLYNIKAYLPVVESFGFSSTLRAATSGQAFPQCVFDHWEMMMSDPLEAGTQASTLVAEIRKRKGLKEQMTPLSRFRGQAVSNRGRSWDGSKACN GARVGEESFLLCFTQQFQIFVASWLNCDIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031764 [exp]	0	1
AT4G28210		EMB1923	embryo defective 1923 (.1)		Lus10033723 [exp]	1.7	0.9290
AT4G32430			Pentatricopeptide repeat (PPR)...		Lus10017032 [exp]	6.9	0.8962
AT5G40660			ATP12 protein-related (.1)		Lus10009910 [exp]	7.3	0.8997
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10005064 [exp]	8.1	0.8987
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Lus10012574 [exp]	10.5	0.8918
AT1G69350			Tetratricopeptide repeat (TPR)...		Lus10030415 [exp]	10.6	0.8772
AT5G66500			Tetratricopeptide repeat (TPR)...		Lus10041770 [exp]	10.7	0.8684
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10009677 [exp]	10.8	0.8947
AT5G60670			Ribosomal protein L11 family p...		Lus10015085 [exp]	11.7	0.8423
AT4G36130			Ribosomal protein L2 family (....		Lus10025966 [exp]	12.3	0.8714

Compare expression of checked genes

Lus10031764 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.