Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16560 479 / 1e-164 Per1-like family protein (.1.2.3.4) AT5G62130 387 / 1e-128 Per1-like family protein (.1.2) AT2G19500 358 / 3e-115 ATCKX2, CKX2 cytokinin oxidase 2 (.1) AT5G56970 356 / 3e-114 ATCKX3, CKX3 cytokinin oxidase 3 (.1) AT4G29740 339 / 8e-109 ATCKX4, CKX4 cytokinin oxidase 4 (.1.2) AT1G75450 328 / 3e-103 ATCKX6, ATCKX5, CKX5 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) AT3G63440 301 / 3e-93 ATCKX6, CKX6, ATCKX7 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) AT2G41510 284 / 3e-86 ATCKX1, CKX1 cytokinin oxidase/dehydrogenase 1 (.1) AT5G21482 253 / 4e-75 ATCKX5, CKX7 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) AT3G47930 47 / 6e-05 ATGLDH "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031188 [exp] 769 / 0 AT5G56970 484 / 1e-167 cytokinin oxidase 3 (.1) Lus10031187 [exp] 691 / 0 AT1G16560 495 / 2e-177 Per1-like family protein (.1.2.3.4) Lus10031200 [exp] 525 / 2e-179 AT2G19500 464 / 1e-159 cytokinin oxidase 2 (.1) Lus10015006 [exp] 416 / 1e-139 AT1G16560 419 / 2e-147 Per1-like family protein (.1.2.3.4) Lus10038885 [exp] 413 / 1e-138 AT1G16560 417 / 2e-146 Per1-like family protein (.1.2.3.4) Lus10027411 [exp] 384 / 2e-127 AT1G16560 393 / 5e-137 Per1-like family protein (.1.2.3.4) Lus10027611 [exp] 353 / 4e-114 AT5G56970 407 / 3e-138 cytokinin oxidase 3 (.1) Lus10003845 [exp] 319 / 2e-101 AT1G75450 578 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10024289 [exp] 322 / 6e-101 AT1G75450 717 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G065800 [exp] 535 / 0 AT1G16560 538 / 0.0 Per1-like family protein (.1.2.3.4) Potri.012G134300 [exp] 462 / 9e-158 AT1G16560 466 / 8e-166 Per1-like family protein (.1.2.3.4) Potri.015G136600 [exp] 451 / 2e-153 AT1G16560 477 / 2e-170 Per1-like family protein (.1.2.3.4) Potri.007G066100 [exp] 422 / 1e-139 AT5G56970 500 / 3e-173 cytokinin oxidase 3 (.1) Potri.006G152500 [exp] 406 / 3e-133 AT5G56970 603 / 0.0 cytokinin oxidase 3 (.1) Potri.002G030500 [exp] 339 / 2e-107 AT1G75450 785 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.005G232300 [exp] 338 / 5e-107 AT1G75450 802 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.006G047900 [exp] 288 / 3e-88 AT2G41510 772 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.003G203600 [exp] 284 / 7e-87 AT3G63440 799 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.001G020900 [exp] 281 / 1e-85 AT3G63440 800 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0192 [flax] [poplar] GPCR_A PF04080 [flax] [poplar] Per1 Per1-like family CL0277 [flax] [poplar] FAD-oxidase_C PF09265 [flax] [poplar] Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Representative CDS sequence Show only first row Show all	>Lus10031765 pacid=23180807 polypeptide=Lus10031765 locus=Lus10031765.g ID=Lus10031765.BGIv1.0 annot-version=v1.0 ATGGAATCCAAACCGATTCAAACCCAAATCAAGCTCCTCCAGTTACTAATATTCTTCGTGACCCAATTCGCAGCTGCCCAATTGCTCAACTGCCCACTCC CCAACCAACTCGGTTCGCAGCTCCGAACCGATACGACTTCGTTAGCATCTGTCTCCGTCGACTACGGCAACATAGTCCAGGTCCAGCCCTCCGCTGTCGT CTACCCTGCCTCCGCGGCCGACATCTCCCTCCTCATAACGACGTTGCACAGCTGCAATACTCCTTACCGCGTCGCGGCCAGAGGGAACGGACACTGCACG CGCGGCCAGGACATGGTCAGCAACGGCGTCGTTTTGGACATGAAGAGCCTGACCCCGGGCCCACTCGGCGGTGTCATCCGGGTCTCGAAGGACGACCCGG ATCACCCGTTCGTCGACGTGGCCGGTGGGACCCTGTGGATTGACGTGCTGAACGCGACGTTGAAGGAAGGAGTTGCACCGGTGACGTGGACGGATTTCTT GTACTTGACCGTCGGAGGCACGCTTTCCAACGCTGGCATCGGCGGCCAGAGTTTCCGGTTTGGCCCTCAGATTTCGAATGTTGTGGAGATGGATGTCGTC ACAGGAAAAGGAGAGATGGTGACTTGCTCAGCAAGCAACAACCCTGAGCTGTACAATGGTGTTTTGGGCGGTTTGGGCCAGTTTGGAGTCATCACCAGAG CAAGACTCGCCTTGGCCCCCGCTCCCCAAAGGGTGAAGTGGACACGACTTCTCTACAGTAATTTTGCCGATTTTACCAAAGACCAAGAGAGTATCATTTC CAACCATGGAAGAGACCAACCGAATGCAGTTGACTATTTGGAAGGTCAACTTCTACTTGACAACGGCACGCCGAACACCTGGGAGACATTCTTCTTCCCA AGTGAAGCTCAGCCCACAATAGCCTCTCTCGTCGCGGAAAACGGCATCGTTTATGTCCTTGAGCTCGCCGTGTACTATGACACCACCAATGAACAAGTCA AGGATCAGCAACTGAAACAACTGATCAACTGGCTAAAGAACGACCATGGCCTAACCTTTGTCCAAGACGTGACATACCAAGAGTTCCTAACCCGAGTCCA TCTCCCATACCCCAACACACAAGCACATCCATGGCTCAACCTCTTCGTCCCGAAATCCAGAATCTCGCAGTTCAACTCCGGCGTGCTTAGGTCCATCGTC TTGCCACGTAACATCAGCACCGGCCCCGTTCTCCTCTACCCAATGAACCGAAACAAACTAGTCTCCGCAAATAGGAAACAACGGATTCTTCCACCATCTC TGGAATTTGATGAATCGATACTTATGATAGCACGGTGTTGGTTTGGCTTCTCCCTGGTGCTTCTATGTCTTCTGCAATCATCAGAAGCCAGTGCTGGTGA TGCTGATCCTAAATACAGGCTGTGTGTCACAATCTGTGAAAGAACTGGCTGTGTGGGAAGTACCTGCTTTCCTCAATGCAACTTTTCATCCGATGCCGCT TCATATGATAGTCCACGGAACACGCACGAACATCTTTATCAGCGATGGAAACTGTGGGACTGCCAGAGTGATTGCAGGCACTTCTGCATGTTTACCAGAG AAGCCGAAAGAGAAAAACTTGGGTATGGTCCTATGAAATACCATGGTAAATGGCCCTTCAAACGAGTCTATGGCATCCAGGAGCCTGCCTCTGTGGCTTT TTCTGCAATCAACCTTGCAATGCACTTTCATGGCTGGCTGTCGTTTGTTATCCTCCTATACTACAAGTTGCCCCTGAAACAAGACAAGATGACTTACTAT GAATTCACACCTTTGTGGCACATCTATGGGCTCTTAGCTTGCAACTCCTGGTTCTGGAGTGTTGTTTTCCATACTCGAGATGTCGATTTTACGGATAAGT TAGACTACTCATCTGCAGTGGCATTACTGGGATACTCACTCATAGTGTCTGTACTAAGAAGTTTCAACGTGCGGGAAGAGGCAGCAAGAGTCATGGTTGC TGCTCCCTTTCTTGCATTTGTTACGACCCATATCTTGTTCCTCAACTTCTACAAAATGGATTACGGATGGAATATGAAAGTCTGCGTTGCTATGGGGGTG GCTCAGCTTCTCATATGGGCGATTTGGGCTGTGACGAGTCGCCATCCTTCTCGTTGGAAGTTGTTGGTGCCCGTCGTGGGAGGAAGCCTCGCGATGCTGT TGGAAATCTATGATTTCCCTCCGTACGAAGGCTACTTCGACGCTCATGCGATCTGGCACGCCACCACGATCCCGCTTACGTACATCTTCTGGAGTTTCAT TAGGGATGATGCCGAGTTCCGCACCACAAACCTCATGAAGAAGGCCAAGTAG
AA sequence Show only first row Show all	>Lus10031765 pacid=23180807 polypeptide=Lus10031765 locus=Lus10031765.g ID=Lus10031765.BGIv1.0 annot-version=v1.0 MESKPIQTQIKLLQLLIFFVTQFAAAQLLNCPLPNQLGSQLRTDTTSLASVSVDYGNIVQVQPSAVVYPASAADISLLITTLHSCNTPYRVAARGNGHCT RGQDMVSNGVVLDMKSLTPGPLGGVIRVSKDDPDHPFVDVAGGTLWIDVLNATLKEGVAPVTWTDFLYLTVGGTLSNAGIGGQSFRFGPQISNVVEMDVV TGKGEMVTCSASNNPELYNGVLGGLGQFGVITRARLALAPAPQRVKWTRLLYSNFADFTKDQESIISNHGRDQPNAVDYLEGQLLLDNGTPNTWETFFFP SEAQPTIASLVAENGIVYVLELAVYYDTTNEQVKDQQLKQLINWLKNDHGLTFVQDVTYQEFLTRVHLPYPNTQAHPWLNLFVPKSRISQFNSGVLRSIV LPRNISTGPVLLYPMNRNKLVSANRKQRILPPSLEFDESILMIARCWFGFSLVLLCLLQSSEASAGDADPKYRLCVTICERTGCVGSTCFPQCNFSSDAA SYDSPRNTHEHLYQRWKLWDCQSDCRHFCMFTREAEREKLGYGPMKYHGKWPFKRVYGIQEPASVAFSAINLAMHFHGWLSFVILLYYKLPLKQDKMTYY EFTPLWHIYGLLACNSWFWSVVFHTRDVDFTDKLDYSSAVALLGYSLIVSVLRSFNVREEAARVMVAAPFLAFVTTHILFLNFYKMDYGWNMKVCVAMGV AQLLIWAIWAVTSRHPSRWKLLVPVVGGSLAMLLEIYDFPPYEGYFDAHAIWHATTIPLTYIFWSFIRDDAEFRTTNLMKKAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16560			Per1-like family protein (.1.2...		Lus10031765 [exp]	0	1
AT4G12590			Protein of unknown function DU...		Lus10027326 [exp]	2.2	0.8812
AT2G45520			unknown protein		Lus10009304 [exp]	3.5	0.8506
AT1G13570			F-box/RNI-like superfamily pro...		Lus10040760 [exp]	6.5	0.8490
AT4G27680			P-loop containing nucleoside t...		Lus10008835 [exp]	7.7	0.8432
AT3G05675			BTB/POZ domain-containing prot...		Lus10013580 [exp]	8.4	0.8782
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Lus10019506 [exp]	9.8	0.8573
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Lus10041015 [exp]	9.9	0.8425
AT3G18165		MOS4	modifier of snc1,4 (.1)		Lus10041997 [exp]	10.0	0.8337
AT3G62080			SNF7 family protein (.1.2)		Lus10038021 [exp]	11.0	0.8383
AT4G25180			RNA polymerase III RPC4 (.1)		Lus10009019 [exp]	12.5	0.8393

Compare expression of checked genes

Lus10031765 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.