Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16540 998 / 0 ACI2, ABA3, SIR3, LOS5, ATABA3 SIRTINOL RESISTANT 3, LOW OSMOTIC STRESS 5, ALTERED CHLOROPLAST IMPORT 2, ABA DEFICIENT 3, molybdenum cofactor sulfurase (LOS5) (ABA3) (.1) AT1G30910 98 / 7e-22 Molybdenum cofactor sulfurase family protein (.1) AT5G44720 84 / 2e-17 Molybdenum cofactor sulfurase family protein (.1.2) AT5G51920 81 / 1e-15 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G37100 81 / 2e-15 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT2G23520 75 / 1e-13 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT5G66950 74 / 2e-13 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G08490 47 / 4e-05 ATSUFS, SUFS, ATCPNIFS, ATNFS2, CPNIFS chloroplastic NIFS-like cysteine desulfurase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031190 [exp] 1523 / 0 AT1G16540 1012 / 0.0 SIRTINOL RESISTANT 3, LOW OSMOTIC STRESS 5, ALTERED CHLOROPLAST IMPORT 2, ABA DEFICIENT 3, molybdenum cofactor sulfurase (LOS5) (ABA3) (.1) Lus10007754 [exp] 100 / 1e-22 AT1G30910 435 / 1e-154 Molybdenum cofactor sulfurase family protein (.1) Lus10018692 [exp] 98 / 5e-22 AT1G30910 432 / 2e-153 Molybdenum cofactor sulfurase family protein (.1) Lus10038892 [exp] 94 / 1e-19 AT5G51920 578 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10006342 [exp] 92 / 1e-18 AT5G51920 432 / 4e-144 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10015013 [exp] 82 / 7e-16 AT5G51920 570 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10022472 [exp] 79 / 2e-14 AT2G23520 1238 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10016776 [exp] 78 / 2e-14 AT2G23520 1229 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10000751 [exp] 72 / 1e-12 AT4G37100 1141 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G066400 [exp] 1093 / 0 AT1G16540 1071 / 0.0 SIRTINOL RESISTANT 3, LOW OSMOTIC STRESS 5, ALTERED CHLOROPLAST IMPORT 2, ABA DEFICIENT 3, molybdenum cofactor sulfurase (LOS5) (ABA3) (.1) Potri.007G036100 [exp] 80 / 5e-15 AT2G23520 1236 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.005G131300 [exp] 78 / 1e-14 AT2G23520 1227 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.015G137900 [exp] 77 / 3e-14 AT5G51920 464 / 3e-157 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.001G111600 [exp] 76 / 4e-14 AT4G22980 431 / 2e-144 unknown protein Potri.003G120500 [exp] 71 / 3e-12 AT5G51920 487 / 3e-166 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.003G154900 [exp] 61 / 9e-10 AT1G30910 332 / 3e-114 Molybdenum cofactor sulfurase family protein (.1) Potri.009G066000 [exp] 53 / 6e-07 AT1G08490 683 / 0.0 chloroplastic NIFS-like cysteine desulfurase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03473 [flax] [poplar] MOSC MOSC domain CL0061 [flax] [poplar] PLP_aminotran PF00266 [flax] [poplar] Aminotran_5 Aminotransferase class-V CL0061 [flax] [poplar] PF03476 [flax] [poplar] MOSC_N MOSC N-terminal beta barrel domain
Representative CDS sequence Show only first row Show all	>Lus10031768 pacid=23180722 polypeptide=Lus10031768 locus=Lus10031768.g ID=Lus10031768.BGIv1.0 annot-version=v1.0 ATGGAAGCTGGAAAGCGAGATTTCCTCAACGAATTTGGCAGCGACTACGGGTATCCCGACGATCTCAGAGGCATTGATGAAATCCGAACTAGCGAGTTCA AGCGATTGAGCAAAAACGGTCTTGTGTACTTGGACCATGCTGGAGCAACCCTCTACTCAGAATCGCAGATGGAGGGAGTTCTGAGTGATCTCGCGGCCAA TGTTTATGGAAATCCTCATAGCCAAAGCGATTGTAGCTCTGCAACCACCGAATCACTGAGGGAAGCGCGCCAACTGGTACTGGATTATTGCAATGCATCT CCAAAGGACTACAAATGTATATTCACGTCTGGCGCCACAGCAGCACTAAAGCTCGTGGGAGAGGCTTTTCCATGGAGTGGTGGCAGCAGTTACATGTACA CCATGGAGAATCACAATAGTGTGCTTGGAATTAGAGAATATGCTCTCAGTCGAGGGGCTGCAGCTTTTGCAGTTGATGTTGAATGTCCCATGCAATCAGA TGAAACATCCACATGCCGTGTTCCTTCCTTTGAATTGTACATGCATCGTGTGCAAAGAAGAAATGAAAACATGATTCCAAATGATGAGGTGTTTAACTTA TTTGCCTTCCCATCCGAATGCAATTTCTCTGGCTTGAGGTTTAACCTTGACTTGGTGAAGCTAATTAAGGAAGACTCGGGCAGAATGTTAAGAGGTTCCC CATATGGCAAGGGGCGGTGGATGGTCTTGATCGATGCTGCAAAAGGATGCTCAACTGAACCACCAGATCTGTCCAAGTATCCCGCAGATTTTGTCGCAAT CTCATTTTATAAGTTATTTGGCTATCCTACTGGACTTGGAGCTCTGGTTGTTCGTAATGATGCTGCCAAGCTGCTGAAACCGACTTATTTCAGTGGAGGC ACCGTCTCAGCATCATTTGCTGATTTGGATTTTGTGAAAAGAAGAGAAAATATTGAAGATCTTTTCGAGGATGGTACCACTTCATTTCTAAGCATAGCGT CTATTCACCATGGTTTCAACATACTCAACTCCTTAACCATGCCTGGGATTCTACGGCACACATCATCGCTTACCATTTATGTTAAGAAATTGCTTTTAGC CTTCAGGCATGGAAATGGGGCTAGTGTCTGCACAGTTTATGGAAGTCATACTACAAAGATGCCTGGTTATGTGTCAGGTCCAACTATATCTTTCAACTTG AAAAGGCAAGATGGTTCATGGGTTGGTTACCGTGAAGTTGAAAAATTGGCTTCTCTGTCGGGAATTCAGCTACGGACAGGGTGTTTCTGTAATCCAGGTG CATGTGCTAAGTACCTTGAGTTGTCTCATTTGGATCTTCTTTCAAACTTTGAGGCAGGACATGTTTGCTGGGATGATCATGACTTGATACGTGGAAAACC TACAGGAGCTGTTCGGATATCATTTGGTTACATGTCAACTTATGAAGATGCGAAGAAATTCATTGATTTCATAAAGGATTCGTTTGTATCCTTAGGAAAT AAAGTTGAGAATGGGAATTTGTCAAGACTGAAGTCTCTTTCTTTCTCAAGTGAAGGCTGTGAAAGAGAACTTCCATCTGATGTCTATCAACTCAAAGCCA TTACCGTGTACCCCATTAAATCATGTGCAGGATTCAGAGTTGAAAGCTGGCCTCTGAGTAGTACTGGTTTACTACATGATAGGGAATGGCTTCTTAGAAG TGTAACTGGCGAAGTTCTGACTCAGAAAAAGGTTCCTGAATTGTGTTTCATCACTACTTCCCTTGATCTCAACAAAGGAACATTGATTGTAGACACGCCT AGATGCAGAGATAAGTTACAGATCAGCCTCGACACAAATTCAACCATTCCTTCGATAGAAGAAATCGAACTGCATGGTCAGAGGTGCATAGTTCAGCAGT ATGATAACGAGGTCAACAACTGGTTCAGCATCGCTGTGGGTCGTCCATGCGCTCTCTTACGATTTTCTGGCTCGAAGTACAACGTCAGCTCGGACTCCAG CAGAATCACCGGCATCTGCCGGGAAACAGAAGGAAGAACCAATTTTCCGAACGAGGCACAGTTACTGTTGATATCGGACGAGAGCATATCCGACCTCAAC TCGAGGTTAAGCTCGGTTGAAGTGAATCCATCGAGATTCCGGCCTAACCTTGTTATATCTGGAGGCGAACCTTATGCAGAAGATGGATGGACGAGTCTCC AAATTGGAAAAGCGCATTTTACATCGATTGGTGGATGCAACCGCTGCCAGATGATCAACTTGGTAGATCAATCTGGACAAGTTCTGAGGACAAACGAACC ATTAGCTACACTAGCTTCGTACAGAAGAGTGAAGGGTAAGATTCTGTTCGGGATACTTCTGAGGTATGAGGTTGGAGACGACGAAGACGATGACGATGAC GTATCGCGTACTGATTCGTGGCTTCGAGTGGGGCAAGATGTTCATCCAACTTCATGGGAGCTCGGCAGTAGTGGTATCTTATGCTCAACGAGACCCTATC AGTGA
AA sequence Show only first row Show all	>Lus10031768 pacid=23180722 polypeptide=Lus10031768 locus=Lus10031768.g ID=Lus10031768.BGIv1.0 annot-version=v1.0 MEAGKRDFLNEFGSDYGYPDDLRGIDEIRTSEFKRLSKNGLVYLDHAGATLYSESQMEGVLSDLAANVYGNPHSQSDCSSATTESLREARQLVLDYCNAS PKDYKCIFTSGATAALKLVGEAFPWSGGSSYMYTMENHNSVLGIREYALSRGAAAFAVDVECPMQSDETSTCRVPSFELYMHRVQRRNENMIPNDEVFNL FAFPSECNFSGLRFNLDLVKLIKEDSGRMLRGSPYGKGRWMVLIDAAKGCSTEPPDLSKYPADFVAISFYKLFGYPTGLGALVVRNDAAKLLKPTYFSGG TVSASFADLDFVKRRENIEDLFEDGTTSFLSIASIHHGFNILNSLTMPGILRHTSSLTIYVKKLLLAFRHGNGASVCTVYGSHTTKMPGYVSGPTISFNL KRQDGSWVGYREVEKLASLSGIQLRTGCFCNPGACAKYLELSHLDLLSNFEAGHVCWDDHDLIRGKPTGAVRISFGYMSTYEDAKKFIDFIKDSFVSLGN KVENGNLSRLKSLSFSSEGCERELPSDVYQLKAITVYPIKSCAGFRVESWPLSSTGLLHDREWLLRSVTGEVLTQKKVPELCFITTSLDLNKGTLIVDTP RCRDKLQISLDTNSTIPSIEEIELHGQRCIVQQYDNEVNNWFSIAVGRPCALLRFSGSKYNVSSDSSRITGICRETEGRTNFPNEAQLLLISDESISDLN SRLSSVEVNPSRFRPNLVISGGEPYAEDGWTSLQIGKAHFTSIGGCNRCQMINLVDQSGQVLRTNEPLATLASYRRVKGKILFGILLRYEVGDDEDDDDD VSRTDSWLRVGQDVHPTSWELGSSGILCSTRPYQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16540		ACI2, ABA3, SIR...	SIRTINOL RESISTANT 3, LOW OSMO...		Lus10031768 [exp]	0	1
AT5G05980		ATDFB, FPGS1	folylpolyglutamate synthetase ...		Lus10030161 [exp]	7.0	0.7754
AT1G16540		ACI2, ABA3, SIR...	SIRTINOL RESISTANT 3, LOW OSMO...		Lus10031190 [exp]	10.8	0.7685
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Lus10036028 [exp]	10.9	0.7187
AT5G06440			unknown protein		Lus10029361 [exp]	13.7	0.7950
AT5G43710			Glycosyl hydrolase family 47 p...		Lus10021888 [exp]	14.2	0.7981
AT1G27760		SAT32, ATSAT32	SALT-TOLERANCE 32, interferon-...		Lus10018689 [exp]	14.7	0.7353
AT4G02460		PMS1	POSTMEIOTIC SEGREGATION 1, DNA...		Lus10030376 [exp]	14.7	0.7968
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Lus10024057 [exp]	21.3	0.7978
AT5G55060			unknown protein		Lus10043118 [exp]	24.5	0.7601
AT5G43710			Glycosyl hydrolase family 47 p...		Lus10041170 [exp]	26.4	0.7777

Compare expression of checked genes

Lus10031768 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.