Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16520 397 / 2e-138 unknown protein AT1G56080 359 / 7e-124 unknown protein AT4G15545 211 / 2e-65 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031193 [exp] 595 / 0 AT1G16520 352 / 5e-121 unknown protein Lus10034001 [exp] 200 / 3e-61 AT4G15545 382 / 5e-133 unknown protein Lus10012775 [exp] 192 / 3e-58 AT4G15545 383 / 2e-133 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G066900 [exp] 454 / 5e-161 AT1G16520 383 / 2e-133 unknown protein Potri.005G097600 [exp] 429 / 1e-150 AT1G16520 338 / 1e-115 unknown protein Potri.010G027400 [exp] 207 / 3e-64 AT4G15545 355 / 2e-122 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031771 pacid=23180663 polypeptide=Lus10031771 locus=Lus10031771.g ID=Lus10031771.BGIv1.0 annot-version=v1.0 ATGTCGCAGGACGACAGTGTACAGGGAAGTGGAGGACGGAGCATCGTTGTTGCCGGCAGCGGCGGGCGGGACGGGCCGGACTTCAGTTTGCCGGATGAGA TTTTGGCCGTGATACCTGCAGATCCTTACGACCAGCTGGATCTAGCGCGCAAGATCACTTCCATGGCAATCGCTTCGCGAGTGTCGAATCTGGAAGCGGA GGTTGGCCTGCTGAAGCAGAGGATGAACGAGAAGGACCGGGTCGTTTACGAGCTGGAAGAGAAAGCGTCTCGCATGCAACGGGCGTACCTGGAGGCTGAG TCGAGATTGAAGCTTACTCTTGACGAAAATGTTAAGCTCACAAAGGAAAGAGATTCTTTGGCAATTAACGTGAAGAAGCTTGGCCGTGATTTGGCTAAGG TAGGAAAGACTATTGTTCATACACGAATTGAGTCTCTTTTGGAGAACTTCAAGAGACAGCTGATGCAGTCACTTAATGATGATAATTCTTCTCAACCGGA GGCTGTTGATATTAGAACCTATGATCAATCTGTTCCAAGGGCTTATCCCGACAAAGATGAAGTAACAAATGGATATGCGAGTGAAAATTCATACAGCGTT TCTAATGACACAGGAGCCGTTGGTGAAGCTCCAAAGTATGGTGGACATAGATTCTCCATAACTCCTTACATCACACCTCGGCTTACTCCGACTGCAACCC CAAAAACTATATCTGCAAGCGTATCCCCTAGGGGTTACTCTGCGGCTGTTTCACCTAGGAGGACCTCCTCAGGTGTGGCATCTCCTACAAAATCTCAATA TGAAGGACAGACTGGCTTTTCTCCATGGTATTCATCTAGTCAACAGTCTTCAGCTGCCAACTCTCCTCCTCGTGGTCACTCTATGCCAGCAAGGACTCCA AGGATCGACGGGAAGGAGTTCTTTCGTCAGGCCAGGAGCCGTCTCTCGTATGAACAATTCAGTGCATTTCTGGCTAACATCAAGGAACTAAATGCCCAAC GGCAAAGTCGAGAGGAGACTTTGAGGAAAGCTGAAGAGATATTCGGGACTGACAGCAAAGATCTCTTCTTATCATTCCAAGGGTTGCTCAACCGTAGCAG CAGCATCGTACGCTGA
AA sequence Show only first row Show all	>Lus10031771 pacid=23180663 polypeptide=Lus10031771 locus=Lus10031771.g ID=Lus10031771.BGIv1.0 annot-version=v1.0 MSQDDSVQGSGGRSIVVAGSGGRDGPDFSLPDEILAVIPADPYDQLDLARKITSMAIASRVSNLEAEVGLLKQRMNEKDRVVYELEEKASRMQRAYLEAE SRLKLTLDENVKLTKERDSLAINVKKLGRDLAKVGKTIVHTRIESLLENFKRQLMQSLNDDNSSQPEAVDIRTYDQSVPRAYPDKDEVTNGYASENSYSV SNDTGAVGEAPKYGGHRFSITPYITPRLTPTATPKTISASVSPRGYSAAVSPRRTSSGVASPTKSQYEGQTGFSPWYSSSQQSSAANSPPRGHSMPARTP RIDGKEFFRQARSRLSYEQFSAFLANIKELNAQRQSREETLRKAEEIFGTDSKDLFLSFQGLLNRSSSIVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16520			unknown protein		Lus10031771 [exp]	0	1
AT1G16520			unknown protein		Lus10031193 [exp]	3.7	0.8239
AT3G10490	NAC	ANAC051, ANAC05...	Arabidopsis NAC domain contain...		Lus10037939 [exp]	4.0	0.8132
AT3G51670			SEC14 cytosolic factor family ...		Lus10012219 [exp]	6.9	0.7922
AT5G62640		AtELF5, ELF5	EARLY FLOWERING 5, proline-ric...		Lus10042169 [exp]	8.8	0.7770
AT4G36520			Chaperone DnaJ-domain superfam...		Lus10028322 [exp]	12.0	0.7516
AT2G32600			hydroxyproline-rich glycoprote...		Lus10022607 [exp]	16.9	0.7673
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Lus10018761 [exp]	17.7	0.7651
AT1G15190			Fasciclin-like arabinogalactan...		Lus10015081 [exp]	18.4	0.7804
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10036627 [exp]	30.7	0.6788
AT2G33510		AtCFL1	unknown protein		Lus10002577 [exp]	33.7	0.7604

Compare expression of checked genes

Lus10031771 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.