Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53720 644 / 0 ATCYP59, CYP59 cyclophilin 59 (.1) AT1G53780 187 / 7e-52 peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases (.1.2.3) AT2G36130 139 / 9e-39 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT1G01940 123 / 8e-33 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G44600 129 / 1e-31 AtCYP71, CYP71 cyclophilin 71, cyclophilin71 (.1) AT5G67530 128 / 2e-31 ATPUB49 plant U-box 49 (.1) AT4G33060 117 / 7e-28 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G13120 102 / 2e-24 Pnsl5, ATCYP20-2 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) AT2G21130 91 / 3e-21 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G38740 89 / 1e-20 ROC1 rotamase CYP 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031194 [exp] 869 / 0 AT1G53720 640 / 0.0 cyclophilin 59 (.1) Lus10021335 [exp] 127 / 3e-34 AT2G36130 286 / 1e-100 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10007794 [exp] 135 / 2e-33 AT5G67530 868 / 0.0 plant U-box 49 (.1) Lus10004731 [exp] 134 / 3e-33 AT5G67530 916 / 0.0 plant U-box 49 (.1) Lus10017010 [exp] 123 / 2e-32 AT2G36130 278 / 4e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10020573 [exp] 130 / 6e-32 AT3G44600 1115 / 0.0 cyclophilin 71, cyclophilin71 (.1) Lus10009237 [exp] 122 / 6e-32 AT1G01940 317 / 2e-112 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10006271 [exp] 130 / 8e-32 AT3G44600 1110 / 0.0 cyclophilin 71, cyclophilin71 (.1) Lus10024999 [exp] 104 / 2e-23 AT4G33060 344 / 9e-112 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G097500 [exp] 680 / 0 AT1G53720 667 / 0.0 cyclophilin 59 (.1) Potri.007G067000 [exp] 143 / 3e-39 AT1G53720 137 / 3e-37 cyclophilin 59 (.1) Potri.016G075600 [exp] 134 / 5e-37 AT2G36130 278 / 3e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G149700 [exp] 127 / 5e-34 AT1G01940 293 / 3e-103 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.014G071600 [exp] 122 / 2e-32 AT1G01940 293 / 2e-103 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G146400 [exp] 130 / 6e-32 AT3G44600 1095 / 0.0 cyclophilin 71, cyclophilin71 (.1) Potri.005G148900 [exp] 128 / 2e-31 AT5G67530 806 / 0.0 plant U-box 49 (.1) Potri.001G060200 [exp] 93 / 5e-21 AT5G13120 297 / 7e-102 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Potri.004G144300 [exp] 94 / 8e-21 AT2G15790 590 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.003G167700 [exp] 92 / 1e-20 AT5G13120 277 / 5e-94 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10031772 pacid=23180642 polypeptide=Lus10031772 locus=Lus10031772.g ID=Lus10031772.BGIv1.0 annot-version=v1.0 ATGTCGGTGCTAATAGTGACGAGCTTAGGGGATTTGGTGGTGGATTTGTTCTCCGACAAGTGCCCCATGACCTGCAAAAACTTTCTGAAACTTTGCAAGA TGAAATACTATAACGGATGCCTCTTCCACACTGTTCAGAAGGACTTCACCGCGCAGACTGGTGATCCTACTGGTGTTGGAGCTGGCGGTGATTCCGTCTA CAAATTTGTTTATGGTGACCAAGCTCGCTTCTTCAATGACGAAATTCATCACGATCTAACACATAAAAGCACTGGAACAGTTGCGATGGCTAGTGCTGGT GAAAATTTGAACGCTTCACAGTTCTATGTTACGTTACGTGATGGCCTGGATTACCTTGATGGGAAGCATACTGTTTTCGGTGAGGTAGCAGAAGGGATTG AAACCCTCTCGAGGATCAACGAAGCTTATGTAGATGAAAAGAACAGACCTTATAAGAATATAAGGATCAAACACACATACATACTTGATGATCCTTTTGA AGATCCCCCACAGCTAGCTGAGTTGATCCCTGATGCTTCCCCGGATGGGAAACCGAAGGATGAGGCTCTCGATGATGTGCGGCTTGAAGATGATTGGATT CCCTTGGATGAATATTTACGTCCAGAAGAACTTGAAGAGGTTTTTAGGGAAAAGGATGCACGTGCTAGTGCTGTTGTACTTGAGAGTATAGGGGACATTC CTGATGCTGACATAAAACCTCCTGAGAATGTGCTGTTTGTTTGCAAACTGAATCCCGTCACTGAAGAAGAGGACTTGAATATAATCTTTTCACGTTTCGG GACTGTGATAAAGGCTGATATAATCCGTGACTATAAGACGGGAAACAGCTTGTGCTATGCTTTTATCGAGTTCGAGACGAATGAAGCTTGTGTGAGAGCA TATAGGAAGATGAATAACGCTTTGATAGACGACCGAAGGATTAAAGTCGACTTCAGCCAAAGTGTGTCAAAACTGTGGTCACAGTACAGGCAGAAAGGCA ACCAGACAGGTGGGAATTGTTTCAAGTGTGGTGCTGCTGATCACAATGCAAAGGATTGCACTGGAAATGGTGCCTCTAAACAGCAGCCTCAGAAATATAC CCTCAAGGATGATAACTCTCAGCATGGCGGAGAACGTTCCAGGTATGACATGGTGTTTGACGGGGACACTCCTGAAAGCCCGAGAGAAGAGAAGAAACTA CCCAATGACCAACTTGGGAGTGAAAGGAGGCATGGAAAGACCTCAGATGACCGGGATGAAAGGGCACAACGGGGTGACAAGAGCCGAGCTGAAGAAGAAG ACGATGATAAGCACCGCGAGAGGAAAGCAAGTCGATATCCTGACGAGCGATCGGGCGAAAGAGAACATCGCAGCAGGAGCAAGGAGAAAGGCGATAATAG AAAGAACGATAACCAGAGTGGTAGAGAAAGTAGAGAGAGTGACAGAGACAGAGATTACCGTAGGAGGAATGGAGATGGTGAATACGATGGTAAACGTCGC AGAAGAGACTTGGAGGACGGTAGAGATTATCATAAGAGACGGCAAGGAGATGGCGACAAGAGAGAATCGCGAGACAGAGAAGAGCGAGAATATCGGCATC GAAGGAATGACAAAAGGAGATGA
AA sequence Show only first row Show all	>Lus10031772 pacid=23180642 polypeptide=Lus10031772 locus=Lus10031772.g ID=Lus10031772.BGIv1.0 annot-version=v1.0 MSVLIVTSLGDLVVDLFSDKCPMTCKNFLKLCKMKYYNGCLFHTVQKDFTAQTGDPTGVGAGGDSVYKFVYGDQARFFNDEIHHDLTHKSTGTVAMASAG ENLNASQFYVTLRDGLDYLDGKHTVFGEVAEGIETLSRINEAYVDEKNRPYKNIRIKHTYILDDPFEDPPQLAELIPDASPDGKPKDEALDDVRLEDDWI PLDEYLRPEELEEVFREKDARASAVVLESIGDIPDADIKPPENVLFVCKLNPVTEEEDLNIIFSRFGTVIKADIIRDYKTGNSLCYAFIEFETNEACVRA YRKMNNALIDDRRIKVDFSQSVSKLWSQYRQKGNQTGGNCFKCGAADHNAKDCTGNGASKQQPQKYTLKDDNSQHGGERSRYDMVFDGDTPESPREEKKL PNDQLGSERRHGKTSDDRDERAQRGDKSRAEEEDDDKHRERKASRYPDERSGEREHRSRSKEKGDNRKNDNQSGRESRESDRDRDYRRRNGDGEYDGKRR RRDLEDGRDYHKRRQGDGDKRESRDREEREYRHRRNDKRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53720		ATCYP59, CYP59	cyclophilin 59 (.1)		Lus10031772 [exp]	0	1
AT5G41770			crooked neck protein, putative...		Lus10041477 [exp]	1.0	0.8316
AT2G42810		AtPP5, PP5.2, P...	Arabidopsis thaliana protein p...		Lus10031381 [exp]	8.4	0.8073
AT1G80930			MIF4G domain-containing protei...		Lus10003392 [exp]	11.0	0.8164
AT3G48120			unknown protein		Lus10004240 [exp]	14.6	0.7662
AT3G57000			nucleolar essential protein-re...		Lus10032054 [exp]	19.4	0.8116
AT1G15420			unknown protein		Lus10030351 [exp]	26.9	0.8146
AT1G53720		ATCYP59, CYP59	cyclophilin 59 (.1)		Lus10031194 [exp]	27.6	0.7364
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Lus10019024 [exp]	31.9	0.7928
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10036655 [exp]	38.3	0.8017
AT3G63240			DNAse I-like superfamily prote...		Lus10006904 [exp]	48.8	0.8040

Compare expression of checked genes

Lus10031772 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.