Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80600 194 / 3e-61 WIN1 HOPW1-1-interacting 1 (.1) AT3G22200 56 / 7e-10 HER1, GABA-T, POP2 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) AT5G46180 56 / 9e-10 DELTA-OAT ornithine-delta-aminotransferase (.1) AT3G08860 52 / 1e-08 PYD4 PYRIMIDINE 4 (.1) AT2G38400 51 / 5e-08 AGT3 alanine:glyoxylate aminotransferase 3 (.1.2) AT4G39660 47 / 7e-07 AGT2 alanine:glyoxylate aminotransferase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031196 [exp] 262 / 1e-87 AT1G80600 606 / 0.0 HOPW1-1-interacting 1 (.1) Lus10008025 [exp] 246 / 5e-80 AT1G80600 614 / 0.0 HOPW1-1-interacting 1 (.1) Lus10023299 [exp] 61 / 3e-11 AT5G46180 743 / 0.0 ornithine-delta-aminotransferase (.1) Lus10038510 [exp] 59 / 6e-11 AT5G46180 741 / 0.0 ornithine-delta-aminotransferase (.1) Lus10009086 [exp] 55 / 2e-09 AT3G08860 625 / 0.0 PYRIMIDINE 4 (.1) Lus10025262 [exp] 54 / 6e-09 AT3G08860 722 / 0.0 PYRIMIDINE 4 (.1) Lus10010465 [exp] 51 / 5e-08 AT3G22200 756 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10003810 [exp] 51 / 5e-08 AT3G22200 758 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10029922 [exp] 43 / 2e-05 AT4G39660 801 / 0.0 alanine:glyoxylate aminotransferase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G095800 [exp] 197 / 3e-62 AT1G80600 636 / 0.0 HOPW1-1-interacting 1 (.1) Potri.017G053500 [exp] 192 / 4e-60 AT1G80600 677 / 0.0 HOPW1-1-interacting 1 (.1) Potri.006G106800 [exp] 54 / 4e-09 AT3G08860 771 / 0.0 PYRIMIDINE 4 (.1) Potri.011G082800 [exp] 54 / 4e-09 AT5G46180 734 / 0.0 ornithine-delta-aminotransferase (.1) Potri.006G020900 [exp] 52 / 2e-08 AT3G22200 834 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.016G132200 [exp] 52 / 3e-08 AT2G38400 769 / 0.0 alanine:glyoxylate aminotransferase 3 (.1.2) Potri.016G018500 [exp] 52 / 3e-08 AT3G22200 826 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.007G080000 [exp] 48 / 2e-07 AT4G39660 278 / 5e-93 alanine:glyoxylate aminotransferase 2 (.1) Potri.007G085600 [exp] 49 / 3e-07 AT4G39660 814 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Potri.005G097250 [exp] 0 / 1 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00202 [flax] [poplar] Aminotran_3 Aminotransferase class-III
Representative CDS sequence Show only first row Show all	>Lus10031775 pacid=23180599 polypeptide=Lus10031775 locus=Lus10031775.g ID=Lus10031775.BGIv1.0 annot-version=v1.0 ATGGGATTCCATAAGCTAGTGACCGAAAGAGTCGCTTCATCCATAAGCTACGGAGATCACGGGAGCACGTTCGCCGGCTGTCCTCTGATATGCAGTGCGG CTCTTTCCGTCCTGAAGAAAATCTCCGACCCGAGTTTCCTAGCCTGTGTGACCGGAAAAGGGCGATTCTTCAAGGGTCTCCTGAAGCAGAATCTCGGTAA GAACCCGCACGTCAAAGAAATCCGAGGAGAAGGGCTGATTATCGGGGTAGACTTGGACGTTGCAGCTTCGCCATTGGTGGACGCGTGTCGAGAAGCCGGC CTTTTGGTGCTGACTGCTGGAAAGGGGAATGTGGTGAGGCTTGTTCCTCCATTGGTGATTACTGAGCAGGAACTCAGCCTTGCTGCTGATATTCTCCACA AGGCTTTGCCAGCACTTGATGCAAGGGATTCCAAGTAA
AA sequence Show only first row Show all	>Lus10031775 pacid=23180599 polypeptide=Lus10031775 locus=Lus10031775.g ID=Lus10031775.BGIv1.0 annot-version=v1.0 MGFHKLVTERVASSISYGDHGSTFAGCPLICSAALSVLKKISDPSFLACVTGKGRFFKGLLKQNLGKNPHVKEIRGEGLIIGVDLDVAASPLVDACREAG LLVLTAGKGNVVRLVPPLVITEQELSLAADILHKALPALDARDSK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Lus10031775 [exp]	0	1
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Lus10017431 [exp]	3.5	0.8495
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Lus10030308 [exp]	4.6	0.8262
					Lus10026796 [exp]	5.1	0.8356
					Lus10002735 [exp]	7.9	0.7556
AT4G12010			Disease resistance protein (TI...		Lus10006789 [exp]	10.2	0.8129
AT3G53150		UGT73D1	UDP-glucosyl transferase 73D1 ...		Lus10014401 [exp]	11.7	0.8158
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10021924 [exp]	13.6	0.8108
AT3G51790		ATG1	transmembrane protein G1P-rela...		Lus10031266 [exp]	16.5	0.8072
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10036697 [exp]	21.4	0.8064
AT5G53110			RING/U-box superfamily protein...		Lus10003400 [exp]	21.7	0.6630

Compare expression of checked genes

Lus10031775 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.