Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56140 187 / 3e-55 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56130 186 / 6e-55 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56120 182 / 2e-53 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56145 170 / 3e-49 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G07650 128 / 2e-34 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53430 127 / 5e-34 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G16670 123 / 7e-34 Protein kinase superfamily protein (.1) AT1G53440 123 / 9e-33 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29730 122 / 1e-32 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29720 118 / 5e-31 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031199 [exp] 248 / 4e-77 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10026207 [exp] 125 / 1e-34 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1) Lus10031374 [exp] 127 / 3e-34 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10042460 [exp] 124 / 5e-34 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1) Lus10041937 [exp] 116 / 3e-30 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10005550 [exp] 115 / 8e-30 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10028149 [exp] 110 / 6e-29 AT1G16670 434 / 6e-152 Protein kinase superfamily protein (.1) Lus10042851 [exp] 110 / 6e-29 AT1G16670 429 / 3e-149 Protein kinase superfamily protein (.1) Lus10031401 [exp] 111 / 8e-29 AT1G56140 337 / 4e-105 Leucine-rich repeat transmembrane protein kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G067900 [exp] 211 / 2e-63 AT1G56130 1290 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G082900 [exp] 185 / 2e-54 AT1G56140 1097 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G148000 [exp] 177 / 1e-51 AT1G56145 1063 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.001G385300 [exp] 132 / 7e-36 AT1G53440 1134 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G386300 [exp] 132 / 7e-36 AT1G53440 1120 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G073191 [exp] 125 / 2e-35 AT1G07650 370 / 1e-120 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.011G073066 [exp] 127 / 3e-35 AT1G07650 488 / 1e-164 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.011G073316 [exp] 127 / 4e-35 AT1G07650 487 / 4e-164 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.011G072841 [exp] 126 / 7e-35 AT1G07650 489 / 3e-165 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.004G135500 [exp] 129 / 9e-35 AT1G07650 1324 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031777 pacid=23180713 polypeptide=Lus10031777 locus=Lus10031777.g ID=Lus10031777.BGIv1.0 annot-version=v1.0 ATGGGAAATTCGTTACCTGCTGCGATTGCTTTGATTCTCGTCCTCGCTGCTTCTTCTTCAATCGGTGGTGTTTTCCGAGTTGCTCGAGCTCAGAATCAAA CTCGTCGAGATACCACTGATCCTGATGAAGATTGCGGGCTGGCGAAACTCTACGATGATAAGAAGACTCACATCAGCACCCGTGTTGCAGGAACAATCCA CCTTACGGAGAAAGCTGACGTCTTCGCCTTCGGAGTCGTAGCTCTAGAAATCGTGAGCGGGAGGCCAAATTCAGACACGACACTGTACGAGGAAAGAATG TACCCTCTCGAATGGGCGTGGTTCTTACACGAGAACAACCGGGAAGTGGAGCTGGCGGACTCCAGATTGTCCTCGGAATTCGACGAAGACGAGCTCAAAC GATTCGTCGGAATCGCCCTCCTCTGTGCTTCCCCTAGTTTGCGGCCCTCGATGTCCCGAGTCGTGGCCATGCTATCCGGAGACGTTGAAGTGGGAGCTGT ATCGTCGAGGCCTGGCTATTTGACTGACTTGGAAGTATGA
AA sequence Show only first row Show all	>Lus10031777 pacid=23180713 polypeptide=Lus10031777 locus=Lus10031777.g ID=Lus10031777.BGIv1.0 annot-version=v1.0 MGNSLPAAIALILVLAASSSIGGVFRVARAQNQTRRDTTDPDEDCGLAKLYDDKKTHISTRVAGTIHLTEKADVFAFGVVALEIVSGRPNSDTTLYEERM YPLEWAWFLHENNREVELADSRLSSEFDEDELKRFVGIALLCASPSLRPSMSRVVAMLSGDVEVGAVSSRPGYLTDLEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56140			Leucine-rich repeat transmembr...		Lus10031777 [exp]	0	1
					Lus10001533 [exp]	1.7	0.9624
AT3G49210			O-acyltransferase (WSD1-like) ...		Lus10033680 [exp]	2.0	0.9589
AT5G65165		SDH2-3	succinate dehydrogenase 2-3 (....		Lus10028289 [exp]	3.5	0.9429
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Lus10036671 [exp]	3.7	0.8984
AT5G01930		MAN6, AtMAN6	endo-beta-mannase 6, Glycosyl ...		Lus10022729 [exp]	4.2	0.9503
AT4G34150			Calcium-dependent lipid-bindin...		Lus10002825 [exp]	4.9	0.8837
AT5G46090			Protein of unknown function (D...		Lus10013933 [exp]	5.9	0.9218
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10021233 [exp]	6.5	0.9221
AT4G34410	AP2_ERF	RRTF1 (Redox Re...	redox responsive transcription...		Lus10014054 [exp]	8.7	0.9248
AT4G23310		CRK23	cysteine-rich RLK (RECEPTOR-li...		Lus10023335 [exp]	9.4	0.9193

Compare expression of checked genes

Lus10031777 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.