Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19500 190 / 2e-56 ATCKX2, CKX2 cytokinin oxidase 2 (.1) AT5G56970 186 / 2e-54 ATCKX3, CKX3 cytokinin oxidase 3 (.1) AT4G29740 179 / 7e-53 ATCKX4, CKX4 cytokinin oxidase 4 (.1.2) AT1G75450 152 / 7e-42 ATCKX6, ATCKX5, CKX5 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) AT3G63440 150 / 2e-41 ATCKX6, CKX6, ATCKX7 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) AT2G41510 142 / 3e-38 ATCKX1, CKX1 cytokinin oxidase/dehydrogenase 1 (.1) AT5G21482 122 / 3e-31 ATCKX5, CKX7 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031200 [exp] 365 / 7e-124 AT2G19500 464 / 1e-159 cytokinin oxidase 2 (.1) Lus10031188 [exp] 314 / 5e-104 AT5G56970 484 / 1e-167 cytokinin oxidase 3 (.1) Lus10031765 [exp] 312 / 2e-100 AT1G16560 496 / 2e-171 Per1-like family protein (.1.2.3.4) Lus10027611 [exp] 187 / 2e-55 AT5G56970 407 / 3e-138 cytokinin oxidase 3 (.1) Lus10003845 [exp] 162 / 2e-46 AT1G75450 578 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10024289 [exp] 164 / 4e-46 AT1G75450 717 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10026471 [exp] 142 / 5e-38 AT5G21482 655 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Lus10039574 [exp] 116 / 5e-29 AT3G63440 544 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10005317 [exp] 114 / 2e-28 AT3G63440 536 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G152500 [exp] 206 / 5e-62 AT5G56970 603 / 0.0 cytokinin oxidase 3 (.1) Potri.007G066100 [exp] 185 / 3e-54 AT5G56970 500 / 3e-173 cytokinin oxidase 3 (.1) Potri.005G232300 [exp] 161 / 3e-45 AT1G75450 802 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.002G030500 [exp] 160 / 8e-45 AT1G75450 785 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.006G047900 [exp] 145 / 2e-39 AT2G41510 772 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.001G020900 [exp] 141 / 9e-38 AT3G63440 800 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.016G044100 [exp] 140 / 1e-37 AT2G41510 752 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.003G203600 [exp] 138 / 6e-37 AT3G63440 799 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.006G221000 [exp] 114 / 2e-28 AT5G21482 674 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0277 [flax] [poplar] FAD-oxidase_C PF09265 [flax] [poplar] Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Representative CDS sequence Show only first row Show all	>Lus10031778 pacid=23180787 polypeptide=Lus10031778 locus=Lus10031778.g ID=Lus10031778.BGIv1.0 annot-version=v1.0 ATGATAACATTCCTCCTACTATCCACCGTCGTCACCGCGGCATTCCAACCCCTCCTCCCCTGCCCTCTCCCTACCCGACTCGAGTCAAAGCTACAAACCG ACCCGGATTCACTATCCTCTGCCTCCGTCGACTACGGTAACATCGTCCACGTCAAACCGTCGGCGGTCATGTCTCCAATATCATCCGCCGAGGACATCTC GCTGCTGATGACGGCGTCGTACAGTTGTCATCTCACGTACGGTGTTGCCACCAGAGGGAATGGACATAGTACACGTGGCCAGAGCATGGTCAGAAACGGC GTCATTTTGGACATGAGGAGGAAAGGAGAGATGGTGACTTGCTCAGCAAGCAACAACCCTGAGCTTTTCAATGGTGTCTTGGGTGGCATTGGCCAATTTG GATTGATTACTAGAGCAAGACTTGCATTGGCTCCCGCTCCCCAAATGGTGAAATTGGCACGACTACTTTACAAAAATTTCCTCGATTTTACCAAAGACCA AGAGAGCATCATCGCCGACGACGAGAATGGAAGAGGTCAACCAAATGGAGTTGACTATTTAGAAGGTCAGCTTTTACTTGACAACGGCGACCCGAAGACA GAGTTCTCAGGTGAAGCTCAACGCAAAATAGCATCTCTCGTTAAGCAAAACGGCATCGTTTGCATCCTTGAGTTGGCGTTGTTCTATGACCACAGCAACG AGAAAGTCGAGGATAAGCAACTGAAGCAACTGGTCAGAGGGCTGAAGTACGACTGTGGATTTAAGTTCATCGATGATGTCAGCTACCGGAAGTTCGTAGA CAGAGCTCACATTAAGTACACTAATGTGCAAGCACATCCGCGGCTGAATCTATTCGTAACGAAATCTGGAATCTCAAAGTTCGGCTCCGGTGTACTTATC GGCATCATCCTGCAGCGAAACATCAGCACCGGACCTGTTCTTTTCCACCCCATGAACAGAAACAAGTAA
AA sequence Show only first row Show all	>Lus10031778 pacid=23180787 polypeptide=Lus10031778 locus=Lus10031778.g ID=Lus10031778.BGIv1.0 annot-version=v1.0 MITFLLLSTVVTAAFQPLLPCPLPTRLESKLQTDPDSLSSASVDYGNIVHVKPSAVMSPISSAEDISLLMTASYSCHLTYGVATRGNGHSTRGQSMVRNG VILDMRRKGEMVTCSASNNPELFNGVLGGIGQFGLITRARLALAPAPQMVKLARLLYKNFLDFTKDQESIIADDENGRGQPNGVDYLEGQLLLDNGDPKT EFSGEAQRKIASLVKQNGIVCILELALFYDHSNEKVEDKQLKQLVRGLKYDCGFKFIDDVSYRKFVDRAHIKYTNVQAHPRLNLFVTKSGISKFGSGVLI GIILQRNISTGPVLFHPMNRNK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56970		ATCKX3, CKX3	cytokinin oxidase 3 (.1)		Lus10031778 [exp]	0	1
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10031958 [exp]	1.4	0.9577
					Lus10027053 [exp]	2.4	0.9378
AT5G01930		MAN6, AtMAN6	endo-beta-mannase 6, Glycosyl ...		Lus10022729 [exp]	6.9	0.9204
AT1G30135	ZIM	TIFY5A, JAZ8	jasmonate-zim-domain protein 8...		Lus10023303 [exp]	7.2	0.9113
AT3G07070			Protein kinase superfamily pro...		Lus10011866 [exp]	10.1	0.9093
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Lus10000206 [exp]	12.2	0.9030
AT4G34410	AP2_ERF	RRTF1 (Redox Re...	redox responsive transcription...		Lus10014054 [exp]	12.2	0.9101
AT1G69500		CYP704B1	"cytochrome P450, family 704, ...		Lus10036772 [exp]	12.8	0.8909
AT5G11160		APT5	adenine phosphoribosyltransfer...		Lus10001497 [exp]	18.6	0.7967
AT5G02530			RNA-binding (RRM/RBD/RNP motif...		Lus10005895 [exp]	19.4	0.8880

Compare expression of checked genes

Lus10031778 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.