Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12920 194 / 1e-59 BRG3 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) AT1G79110 180 / 9e-54 BRG2 BOI-related gene 2, zinc ion binding (.1.2) AT5G45100 159 / 1e-46 BRG1 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) AT4G19700 148 / 3e-42 BOI, RING Botrytis Susceptible1 Interactor, SBP (S-ribonuclease binding protein) family protein (.1) AT1G45976 93 / 2e-21 SBP1 S-ribonuclease binding protein 1 (.1) AT1G10650 85 / 1e-18 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) AT1G60610 82 / 1e-17 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2), SBP (S-ribonuclease binding protein) family protein (.3) AT4G35070 77 / 6e-16 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) AT1G32740 73 / 2e-14 SBP (S-ribonuclease binding protein) family protein (.1) AT4G17680 71 / 7e-14 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031202 [exp] 467 / 2e-166 AT3G12920 255 / 3e-83 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) Lus10018294 [exp] 181 / 3e-54 AT5G45100 266 / 3e-88 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10040613 [exp] 164 / 7e-48 AT5G45100 264 / 3e-87 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10014118 [exp] 102 / 7e-26 AT4G35070 171 / 7e-54 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10019790 [exp] 100 / 8e-25 AT4G35070 170 / 1e-53 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10001131 [exp] 97 / 1e-22 AT1G45976 407 / 7e-143 S-ribonuclease binding protein 1 (.1) Lus10029136 [exp] 95 / 4e-22 AT1G10650 314 / 7e-107 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10030891 [exp] 93 / 9e-22 AT1G10650 275 / 1e-92 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10030597 [exp] 94 / 2e-21 AT1G10650 380 / 3e-132 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G439600 [exp] 282 / 9e-94 AT3G12920 256 / 1e-83 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) Potri.011G142700 [exp] 262 / 9e-86 AT3G12920 233 / 1e-74 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) Potri.015G118000 [exp] 176 / 1e-52 AT5G45100 259 / 2e-85 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.012G119200 [exp] 174 / 1e-51 AT5G45100 244 / 1e-79 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.014G027000 [exp] 98 / 4e-23 AT1G45976 380 / 2e-132 S-ribonuclease binding protein 1 (.1) Potri.004G175500 [exp] 97 / 4e-23 AT4G35070 142 / 1e-41 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.009G135400 [exp] 96 / 7e-23 AT4G35070 135 / 6e-39 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.010G042200 [exp] 95 / 4e-22 AT1G10650 393 / 2e-137 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.003G085800 [exp] 95 / 8e-22 AT1G32740 220 / 9e-70 SBP (S-ribonuclease binding protein) family protein (.1) Potri.012G082200 [exp] 94 / 2e-21 AT1G10650 266 / 2e-87 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031780 pacid=23180730 polypeptide=Lus10031780 locus=Lus10031780.g ID=Lus10031780.BGIv1.0 annot-version=v1.0 ATGGCAGTGGAGGCCAGGCATCTCAATCTCTTCCCTTCTCAGCTCCTCGGCAGCAGCCGGGAGACGATGATGATGAATTCAGTTGAGGCAGCGAATACGA CGACGAGTAATATCATGTACAGCGCACAATCCGGCTACGCCATGCTGTCTTCTCCGGAGGCAGCAACTGCGCTTCTCCCTATGTACGAATCCAATTTTCA TCACCGTACGACGACTCCGTCGATCAAGTCCGAGATCAGTGGCTTGACGTCGTACAACATTAATAATCCGATCTCGAGAAAGCGGCCGAGAGATTCTTCT TCCGGCGCCGGCGTCGAAGGTGCTGGTGCCGTTCATCCTCTTTTCTCTTATCCAGCTGTACCGCAATTGAACCAGGGGAATAAGTCTCAGATCTCGTTTC TCGGTCAGGATTTCTCCCTCCAGATCCAACAACAGCAGCTCGACGCCGATCGGCTTATTTCTCTTCATATGGAGAAAGTTAGAGGTGAGTTAGAAGAAGA GAGGAGGAGGCAAGCGAGGAGGATAATCCAAGTGATCGAGGAAGGAATGGTGAAGCGGCTGAGAGCGAAAGAGGAAGAGATCAAGAAGATCGGGAAACTG AATTGGGCGCTGGAGGAGAAAGTGAAGTCTCTGTATATGGAGAACCAAATCTGGCGAGATCTCGCACAGACGAACGAAGCCACCGCCAACGCTCTCCGCT CCAACCTCGAGAAAGTCCTCGAGAACGACGGGGTTGCATTGATGGACGACGCGCAGTCGTGCTGTGGCAGTAACGTGGAGAGGCACGAGGAGGACGACGC CGCCACCGGGGGGGAATTCTCCGGCGACCGGATGTGCAGGAAATGCGGGGAGGAGGAATCGTGTGTGTTGCTGTTACCGTGCAGGCATCTGTGCTTGTGC AGCGGATGCGAGTCGACGATCCATTCTTGTCCGATCTGTAAGGCGGCGAAGAACGCCAGCTTTCATGTAAACATGTCGTCGACGTCGTGA
AA sequence Show only first row Show all	>Lus10031780 pacid=23180730 polypeptide=Lus10031780 locus=Lus10031780.g ID=Lus10031780.BGIv1.0 annot-version=v1.0 MAVEARHLNLFPSQLLGSSRETMMMNSVEAANTTTSNIMYSAQSGYAMLSSPEAATALLPMYESNFHHRTTTPSIKSEISGLTSYNINNPISRKRPRDSS SGAGVEGAGAVHPLFSYPAVPQLNQGNKSQISFLGQDFSLQIQQQQLDADRLISLHMEKVRGELEEERRRQARRIIQVIEEGMVKRLRAKEEEIKKIGKL NWALEEKVKSLYMENQIWRDLAQTNEATANALRSNLEKVLENDGVALMDDAQSCCGSNVERHEEDDAATGGEFSGDRMCRKCGEEESCVLLLPCRHLCLC SGCESTIHSCPICKAAKNASFHVNMSSTS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12920		BRG3	BOI-related gene 3, SBP (S-rib...		Lus10031780 [exp]	0	1
AT1G22610			C2 calcium/lipid-binding plant...		Lus10009459 [exp]	2.0	0.9437
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Lus10007655 [exp]	2.0	0.9206
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Lus10043408 [exp]	2.4	0.9174
AT3G28917	ZF_HD	MIF2	mini zinc finger 2 (.1)		Lus10015370 [exp]	3.5	0.9162
AT1G14630			unknown protein		Lus10039139 [exp]	4.5	0.9058
AT1G79420			Protein of unknown function (D...		Lus10001755 [exp]	6.3	0.9147
AT2G33850			unknown protein		Lus10018650 [exp]	8.5	0.9037
AT5G10180		SULTR2;1, AST68	sulfate transporter 2;1, ARABI...		Lus10022502 [exp]	10.0	0.8907
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Lus10025834 [exp]	11.4	0.8851
AT3G12920		BRG3	BOI-related gene 3, SBP (S-rib...		Lus10031202 [exp]	12.1	0.8336

Compare expression of checked genes

Lus10031780 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.