Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55710 212 / 6e-70 AtTic20-V translocon at the inner envelope membrane of chloroplasts 20-V, unknown protein AT2G47840 118 / 3e-33 AtTic20-II translocon at the inner envelope membrane of chloroplasts 20-II, Uncharacterised conserved protein ycf60 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031203 [exp] 293 / 3e-102 AT5G55710 263 / 3e-90 translocon at the inner envelope membrane of chloroplasts 20-V, unknown protein Lus10020219 [exp] 102 / 7e-27 AT2G47840 222 / 1e-73 translocon at the inner envelope membrane of chloroplasts 20-II, Uncharacterised conserved protein ycf60 (.1) Lus10026842 [exp] 100 / 8e-26 AT2G47840 219 / 1e-72 translocon at the inner envelope membrane of chloroplasts 20-II, Uncharacterised conserved protein ycf60 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G191700 [exp] 237 / 5e-80 AT5G55710 228 / 2e-76 translocon at the inner envelope membrane of chloroplasts 20-V, unknown protein Potri.013G084900 [exp] 102 / 3e-27 AT2G47840 196 / 2e-63 translocon at the inner envelope membrane of chloroplasts 20-II, Uncharacterised conserved protein ycf60 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031781 pacid=23180812 polypeptide=Lus10031781 locus=Lus10031781.g ID=Lus10031781.BGIv1.0 annot-version=v1.0 ATGTCTGCTCTCCTCCGCATATCTCCGCCGCTTACTCTCTCAGCCAAACATCACCTACCAAGCTCCCGAATCCTGAAGCCATCCTCCTCCTCCTCCACGC GGTTAACAGTAACCGCCAAATCCAACGGCAGCAGCAACTCCGTCGACGCAGGGGACCGGATAATCTCCGCGGTCACCTACTTCTACCCGTTCTTCGACGG TGTACAGTACGGGAAGTACGTAATCATCCAGTTCGCTCCAATCCAGACGCTAATCCAGCCGCTTTTCCCCGCGATTAAGGTCTACAAAAGCTTCCCGCTC AACGGCGTCCTGGTGTTCATGGCCCTCTACTTCGCGGTGGTGAGGAACTCCAACTTCAGTAGGTACGTGCGGTTCAACACGATGCAGGCGATCGTGCTGG ACGTGCTCCTGATTTTCCCTGATTTGCTCGAGAGGAGCTTCAATCCGAAAGAAGGCGTTGGGTTGGATCTTGTGATGAGCCTCGATAGCACTGTTTTCTT GTTCCTTTTGGTTAGCTTGGTTTATGGATCCAGTTCTTGCTTGCTCGGCCAGCTCCCTCGATTGCCCATTGTTGCTGATGCCGCTGACAGGCAAGTTCTG TGA
AA sequence Show only first row Show all	>Lus10031781 pacid=23180812 polypeptide=Lus10031781 locus=Lus10031781.g ID=Lus10031781.BGIv1.0 annot-version=v1.0 MSALLRISPPLTLSAKHHLPSSRILKPSSSSSTRLTVTAKSNGSSNSVDAGDRIISAVTYFYPFFDGVQYGKYVIIQFAPIQTLIQPLFPAIKVYKSFPL NGVLVFMALYFAVVRNSNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNPKEGVGLDLVMSLDSTVFLFLLVSLVYGSSSCLLGQLPRLPIVADAADRQVL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55710		AtTic20-V	translocon at the inner envelo...		Lus10031781 [exp]	0	1
AT5G55710		AtTic20-V	translocon at the inner envelo...		Lus10031203 [exp]	1.0	0.8803
AT1G15100		RHA2A	RING-H2 finger A2A (.1)		Lus10007937 [exp]	2.6	0.8125
AT2G31040			ATP synthase protein I -relate...		Lus10029836 [exp]	5.7	0.8523
AT5G48500			unknown protein		Lus10009584 [exp]	6.7	0.8399
AT3G10960		ATAZG1	AZA-guanine resistant1 (.1)		Lus10009102 [exp]	8.9	0.8087
AT2G29630		PY, THIC	PYRIMIDINE REQUIRING, thiaminC...		Lus10018211 [exp]	12.5	0.8252
AT5G60750			CAAX amino terminal protease f...		Lus10028751 [exp]	18.0	0.7697
AT3G49220			Plant invertase/pectin methyle...		Lus10018103 [exp]	20.8	0.7690
AT2G01590		CRR3	chlororespiratory reduction 3 ...		Lus10027792 [exp]	26.1	0.8170
AT3G27390			unknown protein		Lus10032110 [exp]	27.4	0.8139

Compare expression of checked genes

Lus10031781 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.