Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73860 197 / 1e-57 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G18410 171 / 3e-48 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G63640 99 / 3e-23 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) AT5G41310 65 / 8e-12 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009666 [exp] 432 / 9e-150 AT1G73860 260 / 3e-75 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009028 [exp] 425 / 2e-140 AT1G63640 351 / 5e-103 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10032264 [exp] 75 / 7e-15 AT1G63640 991 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10002007 [exp] 74 / 1e-14 AT1G63640 941 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G047400 [exp] 199 / 3e-58 AT1G63640 908 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.012G056700 [exp] 194 / 1e-56 AT1G63640 857 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.001G104000 [exp] 111 / 1e-27 AT1G63640 1102 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.003G127800 [exp] 108 / 2e-26 AT1G63640 1065 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031784 pacid=23180762 polypeptide=Lus10031784 locus=Lus10031784.g ID=Lus10031784.BGIv1.0 annot-version=v1.0 ATGACTAGAAGTGGTAGCCTAAGGGAGTTCTCACCATACCAAAGCCTCCACCTTGGTACATTCTCATCCTCACTCTCGTCTCCCGCTGCCGAAAAGCAGC CACTCTACTCCGAGTCGAAATTCCAGCAGTTCTTGCGTACCAACCCCGCCCTTTCAGATTTGTTTCGTTCGTTAAGTCTCACCGAGTCATTTTCCGCGTG GATGCACCACGCTGGACACTGGTTCCACGAGGTGTTCCAGGTCAGACAAGGTCGGTACGCTGACCTGTCGCCTTCGAAGATATCCGAGATGATGAAATCA ACCAGCTTAGATAATGCTCCAACTCAGTCTCTTCTAAGTGTTGTCAATGGCATCTTGGATGAAAGCATCGACAGAAAGTACGGTGAAATCCCTCATAGGG TAGCTTGCTTGTTAAGGAAGGTAGTGCAAGAGATTGAAAGGAGGATATCAACTCAAGCAGAACACTTAAGAACACAAAACAACCTTTTCAAGCTAGAGAG GAGAAGTACCAGTCCAGAATTAGGGTTCTTGAGACACTTGCTTCAGGTGAAGATGGAAGAGAGAAGCAAGGTGAATGAAGAGATAGCAATGTTGATGAAA GAAAAGGAACAAGAAAGCATTGAACTTGCAAGGCTAAGGCAAGAGCTGGAAACAACCAAGACCATATATGATGATATGGTGAAGCTAATGAGACAAAGAG ATGAGACAACAACTAGCCTCAAACTCTCATCTCCAAACCAGCAGCGGAGAACGAATGCCGGAATCTCAGCATTGTAG
AA sequence Show only first row Show all	>Lus10031784 pacid=23180762 polypeptide=Lus10031784 locus=Lus10031784.g ID=Lus10031784.BGIv1.0 annot-version=v1.0 MTRSGSLREFSPYQSLHLGTFSSSLSSPAAEKQPLYSESKFQQFLRTNPALSDLFRSLSLTESFSAWMHHAGHWFHEVFQVRQGRYADLSPSKISEMMKS TSLDNAPTQSLLSVVNGILDESIDRKYGEIPHRVACLLRKVVQEIERRISTQAEHLRTQNNLFKLERRSTSPELGFLRHLLQVKMEERSKVNEEIAMLMK EKEQESIELARLRQELETTKTIYDDMVKLMRQRDETTTSLKLSSPNQQRRTNAGISAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73860			P-loop containing nucleoside t...		Lus10031784 [exp]	0	1

Compare expression of checked genes

Lus10031784 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.