Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45030 674 / 0 Trypsin family protein (.1.2) AT3G12950 662 / 0 Trypsin family protein (.1) AT2G35155 647 / 0 Trypsin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031205 [exp] 1025 / 0 AT5G45030 734 / 0.0 Trypsin family protein (.1.2) Lus10038347 [exp] 700 / 0 AT5G45030 834 / 0.0 Trypsin family protein (.1.2) Lus10036208 [exp] 696 / 0 AT5G45030 830 / 0.0 Trypsin family protein (.1.2) Lus10018312 [exp] 674 / 0 AT5G45030 791 / 0.0 Trypsin family protein (.1.2) Lus10017140 [exp] 659 / 0 AT5G45030 776 / 0.0 Trypsin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G143200 [exp] 794 / 0 AT5G45030 752 / 0.0 Trypsin family protein (.1.2) Potri.012G121700 [exp] 724 / 0 AT5G45030 804 / 0.0 Trypsin family protein (.1.2) Potri.015G121400 [exp] 714 / 0 AT5G45030 821 / 0.0 Trypsin family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031785 pacid=23180621 polypeptide=Lus10031785 locus=Lus10031785.g ID=Lus10031785.BGIv1.0 annot-version=v1.0 ATGAGGCGAAATGGGTCGACAGCATCAGAGGATTCAGCATTGGATCACACAGAAAGAAACAACAATGGAAACAACACTAACAGTATGCCATCACTAACAC TTCAAACAACTCTCCACCCTTACTGCGAGAGCAATGCTGCATACTTCTCCTGGCCAACTTCGAGCCGCCTCAACGATGCTGCTGAGGAAAGAGCAAACTA CTTTGCCAACCTGCAGAAAGGAGTCCTTCCTGAGAGTACTCTTGGCAGGTTGCCACAGGGGCAGCGTGCCACCACGTTGCTCGAGCTTATGACCGTAAGG GCATTCCACAGCAAGATCCTGCGGTGTTATAGCCTCGGGACTGCGATTGGGTTCCGGATACGGAGAGGAGTTCTCACTGATGTCCCAGCCATTCTTGTCT TTGTTTCCAGGAAAGTTCACAAGCAGTGGCTCACCCCTATTCAATGCCTCCCCAATGCTCTAGAGGGACCTGGAGGAGTGTGGTGCGATGTCGATGTGCT CGAGTTCTCCTACTTCGGTGCACCGGAGCCAACTCCAAAAGAACAGCTTTATACCGACATTGTCGATGATTTACGAGGGGGTAATCTCTACATTGGTTCA GGTTCGCAGGTTGCAAGCCAGGAGACATATGGAACACTAGGAGCCATAGTGAGGAGCCAGACAGGTAGCAGGCAAGTTGGTTTCTTGACAAACAGGCATG TTGCAGTTGACTTGGACTATCCTAATCAGAAGATGTTCCATCCTCTGCCACCAACACTTGGCCCTGGTGTTTACCTTGGCGCTGTCGAGAGAGCCACCTC TTTCATCACTGATGACCTTTGGTATGCCATCTTCGCAGGCTCCAATCCCGAGACGTTTGTGAGAGCCGACGGGGCATTCATCCCATTCGCGGACGATTTC GACCTCTCGACGGTGACCACATCGGTGAAAGGCGTCGGAGAAGTCGGCAGTGTGAAAAAGATAGACTTGCAGTCACCAATAAGCAGCCTGATAGGGAAAC AAGTGATGAAAGTTGGGAGGAGTTCTGGTCTAACCACAGGGACAGTGCTGGCCTATGCACTGGAGTACAACGACGAGAAGGGCATATGCTTCTTCACCGA TTTCCTCGTCGTGGGGTCTAACCAGCAGACGTTTGACCTCGAAGGTGACAGCGGGAGCATGATCATGATGAAGGGTGGTGGTGATGATGCAGGCGGTGAG GGTAATAAGGCTAAGCCTATTGGGATCATATGGGGTGGCACTGCTAACCGTGGCAGGTTGAAGCTGAAAGTTGGGCAGCCTCCTGAGAATTGGACTAGTG GCGTTGATCTTGGGAGACTGCTGAGTCTCCTTGAGCTGGATCTCATTACCACCAATGAAGGCCTTAAAGTTGCAATTCAAGAACAACGAGCAGCATCAAC AACTGGAATTGGATCAACGGTGGAGGACTTGTCACCTATTGATGGCGGAATGCTGACGAAGGACAAAGACGAAGAGACATTCGAATCACTGGGAATTCAA ATCCAACACATAATCCCTCCTGCTGACGGCCATAATAATCAAGAGACCAAACCACCCCTCGATCAAGGCGTGGAGCATCAGTTCATTCCGAACTTCGGCG AGCAATCCGCACTGCATCAGGAGAACCAGAAGCCTCTTCTTCCTAAGAATCTGGCTTCGTTGCGGAATGGAGGTGATGGTGATGAAGAAGAAGAAGAGAT GATCTCTGTTTCGTTGAAGTTGGGCGACATTAATGAAAGTAAAAGGAAGCGTTCAGAGGTTGCAACCGGAGATGATGATGATTGA
AA sequence Show only first row Show all	>Lus10031785 pacid=23180621 polypeptide=Lus10031785 locus=Lus10031785.g ID=Lus10031785.BGIv1.0 annot-version=v1.0 MRRNGSTASEDSALDHTERNNNGNNTNSMPSLTLQTTLHPYCESNAAYFSWPTSSRLNDAAEERANYFANLQKGVLPESTLGRLPQGQRATTLLELMTVR AFHSKILRCYSLGTAIGFRIRRGVLTDVPAILVFVSRKVHKQWLTPIQCLPNALEGPGGVWCDVDVLEFSYFGAPEPTPKEQLYTDIVDDLRGGNLYIGS GSQVASQETYGTLGAIVRSQTGSRQVGFLTNRHVAVDLDYPNQKMFHPLPPTLGPGVYLGAVERATSFITDDLWYAIFAGSNPETFVRADGAFIPFADDF DLSTVTTSVKGVGEVGSVKKIDLQSPISSLIGKQVMKVGRSSGLTTGTVLAYALEYNDEKGICFFTDFLVVGSNQQTFDLEGDSGSMIMMKGGGDDAGGE GNKAKPIGIIWGGTANRGRLKLKVGQPPENWTSGVDLGRLLSLLELDLITTNEGLKVAIQEQRAASTTGIGSTVEDLSPIDGGMLTKDKDEETFESLGIQ IQHIIPPADGHNNQETKPPLDQGVEHQFIPNFGEQSALHQENQKPLLPKNLASLRNGGDGDEEEEEMISVSLKLGDINESKRKRSEVATGDDDD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45030			Trypsin family protein (.1.2)		Lus10031785 [exp]	0	1
AT5G45030			Trypsin family protein (.1.2)		Lus10031205 [exp]	1.0	0.8949
AT1G09220			Pentatricopeptide repeat (PPR)...		Lus10003133 [exp]	9.2	0.8242
AT1G48170			unknown protein		Lus10011844 [exp]	19.9	0.7969
AT4G08580			microfibrillar-associated prot...		Lus10020319 [exp]	20.9	0.8153
AT3G19895			RING/U-box superfamily protein...		Lus10034201 [exp]	27.1	0.7734
AT2G02880			mucin-related (.1)		Lus10012838 [exp]	34.9	0.7751
AT5G05210			Surfeit locus protein 6 (.1.2)		Lus10014455 [exp]	47.9	0.7978
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Lus10015133 [exp]	63.2	0.7722
AT3G51060		SRS1, STY1	STYLISH 1, SHI RELATED SEQUENC...		Lus10041803 [exp]	69.6	0.7513
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10025714 [exp]	77.9	0.7393

Compare expression of checked genes

Lus10031785 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.