Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16610 178 / 9e-52 RNPS1, SR45 arginine/serine-rich 45 (.1.2.3) AT2G27330 69 / 3e-14 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G73530 66 / 1e-12 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G06210 59 / 2e-10 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT5G19030 59 / 2e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT3G23830 58 / 2e-10 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT5G54580 58 / 5e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G08000 57 / 6e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G79100 55 / 7e-10 arginine/serine-rich protein-related (.1) AT3G46020 54 / 5e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031212 [exp] 263 / 5e-85 AT1G16610 210 / 6e-64 arginine/serine-rich 45 (.1.2.3) Lus10027383 [exp] 152 / 8e-42 AT1G16610 156 / 7e-43 arginine/serine-rich 45 (.1.2.3) Lus10002542 [exp] 147 / 3e-40 AT1G16610 149 / 8e-41 arginine/serine-rich 45 (.1.2.3) Lus10014802 [exp] 64 / 5e-11 AT5G54580 176 / 2e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10003593 [exp] 64 / 6e-11 AT5G54580 174 / 6e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10015146 [exp] 59 / 1e-10 AT3G08000 145 / 5e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10031534 [exp] 59 / 2e-10 AT3G08000 146 / 2e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10032591 [exp] 57 / 2e-09 AT4G13850 157 / 5e-50 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10023758 [exp] 57 / 2e-09 AT2G37510 164 / 9e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G143100 [exp] 199 / 1e-59 AT1G16610 169 / 3e-48 arginine/serine-rich 45 (.1.2.3) Potri.009G160300 [exp] 62 / 7e-12 AT2G27330 98 / 1e-27 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G208500 [exp] 62 / 1e-11 AT5G06210 160 / 1e-51 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G409800 [exp] 62 / 1e-11 AT5G54580 174 / 2e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G038200 [exp] 62 / 4e-11 AT1G73530 141 / 6e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.011G130300 [exp] 61 / 6e-11 AT5G54580 161 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.017G059000 [exp] 57 / 6e-10 AT4G13850 134 / 9e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.008G097500 [exp] 58 / 9e-10 AT1G13690 230 / 6e-78 ATPase E1 (.1) Potri.001G319900 [exp] 57 / 1e-09 AT4G13850 140 / 1e-43 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.010G199000 [exp] 57 / 5e-09 AT3G11400 422 / 4e-150 eukaryotic translation initiation factor 3G1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10031786 pacid=23180662 polypeptide=Lus10031786 locus=Lus10031786.g ID=Lus10031786.BGIv1.0 annot-version=v1.0 ATGGCGAAACCATCTCGACGCCGACGTTCGTCTCCGTCCGATTCAGGCTCTTCGCGCTCGCGCTCACGCTCGCGCTCCTTCACCCGCTCAGATTCCAGCT CCCGCTCTAGGTCGCCGGCGAGATCCATCTCTTCTTCTTCTCCGTCTCGCAGTCCGCCTCCACAACGGAAGAGCTCTGCCGAAGTAGCTAAACGAGGCCG CAGTCCTGTAACAAGAAAGCCATCTCCGCCACCAAGAAAAGCTTCTCCAATCCGCGAGTCTCTGGTTCTCCATGTCGACTCACTGAGTAGGAATGTAAAC GAGGGCCATTTGAAAGAAATATTCAGCAACTATGGTGAAGTGGTGCATGTGGATCTGGCGATGGACCGCGCTGTGAATCTTCCAAAAGGATTTGGATACA TTGAGTTTAAGGTCAGAGAAGATGCTGAGAAGGCTTTGTTGTACATGGATGGGGCCCAAATAGATGGTAATGTTGTTCGACTTCGCTTTACATTACCTCC ACGGCAGAATGTTTCACCACGTGCGAAGCCTTCAGTAACTGCTCTGAAACGAGATGTACCGAAAACTGATGGGGCCAGTGATGTCGAGAAGGATGGACCA AAAACTGCAAGAGAACCCTCTCCTCAAAGAAGATCTCCTGTTCCTCGAAGAGGTGCTTCTCCTCCTCCACGCAGGCGCGTTGATTCTCCGGTTCGCCGCC GTCGAGGGGATACCCCTCCTAGACGAAGACCGGCATCCCCAGGTAGGGGTCGGTCTCCATCTCCTCCTTCGAGAAGATACCGATCCCCTCCAAGGACTTC TCCACGAAGAGTACGTGGCAGTCCCATTCGTAGGCGTTCTCCACTACCTCTAAGGAGGCGTTCACCTCCTAGGCGACCCCGGTCTCCTCCAAGAAGGTCA CCACTCCGTAGGCCTAGCCGGTCTCCGATTCGTCGGCCTCTCCGCTCGCGGTCTAGATCGCTCTCTCCACGGAGGGGCCGAGGACCACCTGCAAGACGTG GGAGATCGTCATCTTCATCTGACTCTCCTAGTCCGCGCAAGGCACCTCTGCGTAAGATTTCAAGGAGCCGCAGTCCTAAAAGGCCCGTGAGAGGAAGAAG CAGCAGTAACAGCAGCAGCAGCAGATCGCCACCTCGAACTAGAAGGCCATAG
AA sequence Show only first row Show all	>Lus10031786 pacid=23180662 polypeptide=Lus10031786 locus=Lus10031786.g ID=Lus10031786.BGIv1.0 annot-version=v1.0 MAKPSRRRRSSPSDSGSSRSRSRSRSFTRSDSSSRSRSPARSISSSSPSRSPPPQRKSSAEVAKRGRSPVTRKPSPPPRKASPIRESLVLHVDSLSRNVN EGHLKEIFSNYGEVVHVDLAMDRAVNLPKGFGYIEFKVREDAEKALLYMDGAQIDGNVVRLRFTLPPRQNVSPRAKPSVTALKRDVPKTDGASDVEKDGP KTAREPSPQRRSPVPRRGASPPPRRRVDSPVRRRRGDTPPRRRPASPGRGRSPSPPSRRYRSPPRTSPRRVRGSPIRRRSPLPLRRRSPPRRPRSPPRRS PLRRPSRSPIRRPLRSRSRSLSPRRGRGPPARRGRSSSSSDSPSPRKAPLRKISRSRSPKRPVRGRSSSNSSSSRSPPRTRRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Lus10031786 [exp]	0	1
AT3G25150			Nuclear transport factor 2 (NT...		Lus10003144 [exp]	1.0	0.9283
AT4G20940			Leucine-rich receptor-like pro...		Lus10038544 [exp]	6.5	0.9226
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10040316 [exp]	6.6	0.9032
AT5G52890			AT hook motif-containing prote...		Lus10001140 [exp]	7.7	0.9137
AT5G45700			Haloacid dehalogenase-like hyd...		Lus10029273 [exp]	14.3	0.9116
AT1G16630			unknown protein		Lus10006845 [exp]	15.8	0.9140
AT4G01560		MEE49	maternal effect embryo arrest ...		Lus10007860 [exp]	20.6	0.8689
AT5G58930			Protein of unknown function (D...		Lus10040700 [exp]	21.8	0.8894
AT2G32590		EMB2795	EMBRYO DEFECTIVE 2795, unknown...		Lus10031539 [exp]	22.0	0.9040
AT5G43020			Leucine-rich repeat protein ki...		Lus10024803 [exp]	22.2	0.9015

Compare expression of checked genes

Lus10031786 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.