Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79090 612 / 0 unknown protein AT3G22270 518 / 7e-173 Topoisomerase II-associated protein PAT1 (.1) AT4G14990 510 / 7e-170 Topoisomerase II-associated protein PAT1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031210 [exp] 1254 / 0 AT1G79090 766 / 0.0 unknown protein Lus10039002 [exp] 485 / 3e-159 AT3G22270 734 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Lus10010445 [exp] 469 / 4e-153 AT4G14990 721 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Lus10012099 [exp] 464 / 2e-151 AT3G22270 702 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Lus10027297 [exp] 458 / 2e-146 AT3G22270 694 / 0.0 Topoisomerase II-associated protein PAT1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G143900 [exp] 895 / 0 AT1G79090 734 / 0.0 unknown protein Potri.001G457800 [exp] 843 / 0 AT1G79090 687 / 0.0 unknown protein Potri.006G021900 [exp] 581 / 0 AT3G22270 699 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Potri.016G020100 [exp] 574 / 0 AT3G22270 733 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Potri.016G020600 [exp] 448 / 1e-147 AT3G22270 540 / 0.0 Topoisomerase II-associated protein PAT1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031788 pacid=23180634 polypeptide=Lus10031788 locus=Lus10031788.g ID=Lus10031788.BGIv1.0 annot-version=v1.0 ATGGACAGGTTCATGAACGGAGGCGGGATTCCGCAGGGTTCCAAGATGGAGGAGCCCAAACAATTCGGAGTTAGCGCTTCAGGGGATGCTTTGTTTGATG CATCTCAATATGCATTTTTTGGGAAAGATCTCGTTGAGGAAGTGGAGCTGGGTGGATTGGACGACGAGGGGGAAGATTCTGTTTCTGCTCCGGTTGAACT GGAAGAAGAGGAGTTCTTGTTTGATAGACAAGAGGGCGACGGTATAGGATCTCTATCGGATATTGATGATCTTAGCAGTACGTTTTCAAAGTTAAACAAG GATGTAGGTGGTCCAACAAGATTAGGTGTGAATTCTGACAGGGGTTCAAGAGAAAGTTCATCTGCTGCTGAGTGGGTTCAAGGGGAAGAGGTCCCTAATT GGTTTGATCAGCAGACATTTGATGCGGACAGCTCTCAAGATGGAAAGAAGTGGTTGTCACATCCCTTTTCCTCTTCTGCTTGGCCAGGAGATCCTAAAAA TCTGTATCGAACAACTTCATATCCAGAGCAACCACAGCAGCTCCACCAGCAAACACACCAACAGTTCTCAAGCGAACCGATTCTTGTCCCAAAAACATCT TATCCTTCATATCCTCCTCCTGACGGGCAATCGCCACATGCTTCACCAAATCATAGTCAGCTAAATACTCCATACCTCACTGGAAACTCCCAGATGTCAC TATCTCCACAAAACCTTTCCCCTTTCTCGAATCCTCAGCTTCAAATGACTGGTGTGCGCCAGGGATCACCACAGTATGGCATAAACTTGCCGCAGTATGC CTCTGGCCTTTCTGGTAGTAATCGTCCACCAAGTCAATGGGCTAACCAGTCTGGAATGTTTCCTGGAGACCATAACAACCGCTTGAACAATGTGCTGCAA AAGCAAATGCCTCATCAAAATGGGTTAATGCCTCCACAGCTGATGCCTCACTTACAGCAGCAGCCACACAGACTGCACCATCAGGGGCCACCATCTTTGA ATCATTTATCAGGTATGCAGAGTCAGCTATTTGGCACTCATCTCCGCCCATCGCGTCCAATGATGCCAAGTGCAATTCTTGGTGCTGGTGACTCGAGAGA TCAAATGCCAACATCAGCTCAGAGAGGTAGAATGAATATGGGATATTCTCAAATGGGTTTTGATGCAAATAGGCAGAGAATGGGCTGGCCAAGGTTTAGA TCCAAGCATATGTCATCTGATGAACTCGAGGGTATTCTGAGAATGCAGCTTGCTGCAACTCACAGCAATGATCCCTACGTGGATGATTATTATAACCAGG GTCGTCGTGCGAAAAGATCAGCTGGGGCTAAGCTTCGACATCATTTCTGTCCGACCCACTTGAGGGATCTTCCTCCCGGGGCACGTGTGAATTCAGAGCC TCATGCATTTCTAAAGGTTGATGCACTTGGTAGGGTTCCTTTCTCATCCATCCGTAGGCCCCGTCCTCTTCTCGAGGTTGAACCCCCAAATTCTTCCGAT GGAGGTGATGGAGGTAATAATGAGCACGCCATTTCTGAGAAGCCCTTAGAGCAGGAGCCTTTGCTTGCTGCTAGAGTCACAATTGAAGATGGTCTTTGCC TACTCCTTGATGTAGATGATATTGACCGGTTGCTTGAATTTAATCCGCTCCCTGATGGTGAGCTAGCTCACTTGAGACAGCGTCGTCAGGCTTTGTTAGA AGGGCTGGCAACCTCTCTGCAATTGGTTGATCCACTTGGAAAGAATGGACAGACAGTTGGGCTTGCTGCAGAGGATGATATTGTTTTCTTAAGGGTAGCA TCTTTGCCTAAGGGCCGGAAACTTCTCTCGAGATACCTGCAACTTCTCTTCCCAGCTGGTGACCTCTTACGGATCGTATGTATGGCCATCTTTCGTCATT TAAGGTTTCTTTTCGGTGTTACCCCCTCAGATGCCAGAGCTGCCGAAACTACAATCCACCTTGCGAGGACAGTATCGTTTTGTGTCCGTCGGATGGATCT CGGTTCACTTAGCGCGTGCCTCGCTGCTGTGGTGTGCTCTTCTGAGCAGCCTCCATTACGCCCACTTAGTAGCTCAGCTGGAAATGGGGCATCTGTCATC GTAGTCTCAGTTCTTGAGCGCGCCTCTGAAATGTTGACCGAAGTCCACGATGCTAGTAATTACGGTGTCGCGAATCGAGCTCTTTGGAATGCCTCGTTTG ATGAGTTCTTCGGCCTCCTCATCAAGTACTGTGTGAACAGGTACGACAGTATCATGCAGTCTCCTGGATTAGATCCAGCTGAAGCTATCAAGAGGGAACT GCCAATGGAGCTCTTGCGTGCAAGCGTTCCGCACACGAACGACTATCAGAAGAAGATGATGTACGATCTTTCTCAGCGATCTCTTGCTGGCCAGGACAAA GGCAACGTCGGCCTAGGAGTGTGA
AA sequence Show only first row Show all	>Lus10031788 pacid=23180634 polypeptide=Lus10031788 locus=Lus10031788.g ID=Lus10031788.BGIv1.0 annot-version=v1.0 MDRFMNGGGIPQGSKMEEPKQFGVSASGDALFDASQYAFFGKDLVEEVELGGLDDEGEDSVSAPVELEEEEFLFDRQEGDGIGSLSDIDDLSSTFSKLNK DVGGPTRLGVNSDRGSRESSSAAEWVQGEEVPNWFDQQTFDADSSQDGKKWLSHPFSSSAWPGDPKNLYRTTSYPEQPQQLHQQTHQQFSSEPILVPKTS YPSYPPPDGQSPHASPNHSQLNTPYLTGNSQMSLSPQNLSPFSNPQLQMTGVRQGSPQYGINLPQYASGLSGSNRPPSQWANQSGMFPGDHNNRLNNVLQ KQMPHQNGLMPPQLMPHLQQQPHRLHHQGPPSLNHLSGMQSQLFGTHLRPSRPMMPSAILGAGDSRDQMPTSAQRGRMNMGYSQMGFDANRQRMGWPRFR SKHMSSDELEGILRMQLAATHSNDPYVDDYYNQGRRAKRSAGAKLRHHFCPTHLRDLPPGARVNSEPHAFLKVDALGRVPFSSIRRPRPLLEVEPPNSSD GGDGGNNEHAISEKPLEQEPLLAARVTIEDGLCLLLDVDDIDRLLEFNPLPDGELAHLRQRRQALLEGLATSLQLVDPLGKNGQTVGLAAEDDIVFLRVA SLPKGRKLLSRYLQLLFPAGDLLRIVCMAIFRHLRFLFGVTPSDARAAETTIHLARTVSFCVRRMDLGSLSACLAAVVCSSEQPPLRPLSSSAGNGASVI VVSVLERASEMLTEVHDASNYGVANRALWNASFDEFFGLLIKYCVNRYDSIMQSPGLDPAEAIKRELPMELLRASVPHTNDYQKKMMYDLSQRSLAGQDK GNVGLGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79090			unknown protein		Lus10031788 [exp]	0	1
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Lus10042856 [exp]	4.8	0.9002
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10015337 [exp]	5.2	0.8888
AT5G02310		PRT6, CER3	proteolysis 6 (.1)		Lus10024393 [exp]	5.3	0.8849
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Lus10000183 [exp]	6.0	0.8893
AT2G33290		SDG3, ATSUVH2, ...	SET DOMAIN-CONTAINING PROTEIN ...		Lus10014457 [exp]	6.7	0.8737
AT4G13460		SET22, SDG22, S...	SETDOMAIN GROUP 22, SU(VAR)3-9...		Lus10023714 [exp]	7.1	0.8698
AT1G48110		ECT7	evolutionarily conserved C-ter...		Lus10018343 [exp]	9.2	0.8629
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10034777 [exp]	9.5	0.8800
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Lus10028156 [exp]	14.7	0.8816
AT5G65950			unknown protein		Lus10037422 [exp]	15.7	0.8829

Compare expression of checked genes

Lus10031788 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.