Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56050 552 / 0 GTP-binding protein-related (.1) AT1G30580 216 / 3e-66 GTP binding (.1) AT1G07615 49 / 4e-06 GTP-binding protein Obg/CgtA (.1) AT5G18570 47 / 2e-05 EMB3138, ATOBGL, CPSAR1, EMB269, ATOBGC EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031209 [exp] 630 / 0 AT1G56050 630 / 0.0 GTP-binding protein-related (.1) Lus10023261 [exp] 215 / 6e-66 AT1G30580 711 / 0.0 GTP binding (.1) Lus10038543 [exp] 213 / 3e-65 AT1G30580 713 / 0.0 GTP binding (.1) Lus10024297 [exp] 49 / 5e-06 AT5G18570 171 / 2e-46 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10043418 [exp] 47 / 2e-05 AT5G18570 724 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10034166 [exp] 47 / 3e-05 AT5G18570 647 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10016548 [exp] 45 / 0.0001 AT1G07615 511 / 1e-178 GTP-binding protein Obg/CgtA (.1) Lus10040813 [exp] 44 / 0.0001 AT1G07615 293 / 1e-95 GTP-binding protein Obg/CgtA (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G457900 [exp] 580 / 0 AT1G56050 663 / 0.0 GTP-binding protein-related (.1) Potri.011G143700 [exp] 345 / 2e-118 AT1G56050 357 / 1e-122 GTP-binding protein-related (.1) Potri.001G465900 [exp] 217 / 1e-66 AT1G30580 681 / 0.0 GTP binding (.1) Potri.011G164000 [exp] 216 / 2e-66 AT1G30580 691 / 0.0 GTP binding (.1) Potri.010G022400 [exp] 49 / 4e-06 AT5G18570 687 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Potri.002G029600 [exp] 49 / 4e-06 AT5G18570 144 / 7e-37 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Potri.001G239600 [exp] 46 / 3e-05 AT1G07615 511 / 3e-178 GTP-binding protein Obg/CgtA (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF06071 [flax] [poplar] YchF-GTPase_C Protein of unknown function (DUF933) CL0023 [flax] [poplar] P-loop_NTPase PF01926 [flax] [poplar] MMR_HSR1 50S ribosome-binding GTPase
Representative CDS sequence Show only first row Show all	>Lus10031789 pacid=23180587 polypeptide=Lus10031789 locus=Lus10031789.g ID=Lus10031789.BGIv1.0 annot-version=v1.0 ATGGCGAGAACAGCTTGCGCCAACTTCATTCCTGCCTTAGCACTTCTCCCTACGAAGTCATCTCCTTCGTCCATCTTCAATGGCTGCGTGGCGATTCGCC GGAGACTTTCGTCTTCGTCTTCCAGGATTAGCATGAGCTTGAAAGCAGGTATCGTCGGCCTGCCTAACGTCGGCAAGTCCACTCTCTTCAACGCCGTTGT TGAGAACGGGAAAGCTCAGGCGGCGAATTTCCCATTCTGTACTATCGAACCGAATGTAGGAGCTGTTGCAGTTCCAGATCCTCGACTGAACGTGCTTTCT GATATCAGTAAATCGCAAAAGGCAGTGCCAACCTCTATTGAGTTCGTTGATATTGCTGGTCTTGTTAAGGGAGCAAGCCAAGGCGAGGTTGTACGATGCT TCGAGGATAATGACATTGTTCATGTGAATGGGAGAGTGGATCCCAAGGATGATATTGATGTGATAAACTTGGAGCTTGTATTCTCAGATGTAGACCAGAT TGAAAAAAGACTGGAGAAGCTAAAGAAAGGGAAGCCGAAGGATTCACAATCTAAAGTCAAGGAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATCCAAGCT GCTCTTATGGATGGAAAACCAGCCAGGTCTGTAAGTTTAACAGATTTTGAGAAGGATGCTATAAAGCATCTCTGCTTGCTTACCATGAAACCTATCATAT ATGTGGCAAACGTCGCGGAAAATGAATTAGCTGTTCCTGAAGATAATCCTCATGTAAAAGAAGTGATGAATGTAGCAGCCAAATTGAAATCTGGAATAGT CACTGTTTCAGCACAGGTTGAATCAGAGCTTTCAGAGTTGCCGCTTGAAGAAAGGTCGGAGTACTTGAATTCACTTGGTGTAAGTGAAAGTGGACTGGGC AATCTTGTGAGGGCAACATATGACCTTTTAGGATTGCGTACATACTTTACGTCGGGTGAGAAGGAAACTAAAGCATGGACCATTCGCACAGGAATGACTG CACCACAGGCTGCTGGAGTCATACACTCAGACTTTGAAAGAGGTTTCATTCGAGCTGAGACGGTTGCATACGATGATTTTGTTGCTGCTGGCTCACTTTC AGCCGCAAAGGAAAAAGGACTTTTGAGATCAGAGGGGAAAGACTACATTGTTCAAGAAGGAGATGTGATGTTGTTTCGCTTCAACGTCTAA
AA sequence Show only first row Show all	>Lus10031789 pacid=23180587 polypeptide=Lus10031789 locus=Lus10031789.g ID=Lus10031789.BGIv1.0 annot-version=v1.0 MARTACANFIPALALLPTKSSPSSIFNGCVAIRRRLSSSSSRISMSLKAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGAVAVPDPRLNVLS DISKSQKAVPTSIEFVDIAGLVKGASQGEVVRCFEDNDIVHVNGRVDPKDDIDVINLELVFSDVDQIEKRLEKLKKGKPKDSQSKVKEEAEKSALEKIQA ALMDGKPARSVSLTDFEKDAIKHLCLLTMKPIIYVANVAENELAVPEDNPHVKEVMNVAAKLKSGIVTVSAQVESELSELPLEERSEYLNSLGVSESGLG NLVRATYDLLGLRTYFTSGEKETKAWTIRTGMTAPQAAGVIHSDFERGFIRAETVAYDDFVAAGSLSAAKEKGLLRSEGKDYIVQEGDVMLFRFNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56050			GTP-binding protein-related (....		Lus10031789 [exp]	0	1
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10034302 [exp]	5.7	0.9554
AT3G62030		CYP20-3, ROC4	cyclophilin 20-3, rotamase CYP...		Lus10009255 [exp]	5.7	0.9335
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Lus10015677 [exp]	5.8	0.9550
AT1G56050			GTP-binding protein-related (....		Lus10031209 [exp]	6.0	0.9140
AT3G08920			Rhodanese/Cell cycle control p...		Lus10002485 [exp]	11.2	0.9478
AT3G62030		CYP20-3, ROC4	cyclophilin 20-3, rotamase CYP...		Lus10038015 [exp]	12.0	0.9193
AT5G39530			Protein of unknown function (D...		Lus10024051 [exp]	12.6	0.9401
AT5G42030		ABIL4	ABL interactor-like protein 4 ...		Lus10023654 [exp]	14.0	0.9195
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Lus10041940 [exp]	14.6	0.9434
AT3G08920			Rhodanese/Cell cycle control p...		Lus10004811 [exp]	18.8	0.9363

Compare expression of checked genes

Lus10031789 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.