Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12955 73 / 4e-17 SAUR-like auxin-responsive protein family (.1) AT5G20820 71 / 1e-16 SAUR-like auxin-responsive protein family (.1) AT1G17345 63 / 2e-13 SAUR-like auxin-responsive protein family (.1) AT1G72430 57 / 2e-11 SAUR-like auxin-responsive protein family (.1) AT4G34750 38 / 0.0005 SAUR-like auxin-responsive protein family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037443 [exp] 61 / 3e-12 AT1G72430 114 / 1e-33 SAUR-like auxin-responsive protein family (.1) Lus10013181 [exp] 57 / 5e-11 AT1G72430 119 / 9e-36 SAUR-like auxin-responsive protein family (.1) Lus10034507 [exp] 42 / 4e-05 AT1G75590 189 / 1e-62 SAUR-like auxin-responsive protein family (.1) Lus10033161 [exp] 38 / 0.0008 AT1G75590 187 / 4e-62 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G143400 [exp] 104 / 1e-29 AT3G12955 91 / 2e-24 SAUR-like auxin-responsive protein family (.1) Potri.001G458000 [exp] 99 / 2e-27 AT3G12955 86 / 3e-22 SAUR-like auxin-responsive protein family (.1) Potri.003G071000 [exp] 67 / 7e-15 AT1G72430 126 / 9e-39 SAUR-like auxin-responsive protein family (.1) Potri.006G137000 [exp] 66 / 9e-15 AT5G20820 135 / 3e-42 SAUR-like auxin-responsive protein family (.1) Potri.001G164300 [exp] 51 / 8e-09 AT1G72430 108 / 2e-31 SAUR-like auxin-responsive protein family (.1) Potri.018G132400 [exp] 42 / 4e-05 AT3G43120 64 / 2e-13 SAUR-like auxin-responsive protein family (.1) Potri.006G070600 [exp] 41 / 4e-05 AT5G18060 61 / 6e-13 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10031790 pacid=23180750 polypeptide=Lus10031790 locus=Lus10031790.g ID=Lus10031790.BGIv1.0 annot-version=v1.0 ATGAAGAAGATCAACTTGCTACTCAGAAAGTGTAAGAGCCTCTCCAAGCAGCTCGGAAGATCTTCATCCTACAGCAGCTTAAGATCATCCAAGAATGATC ACCACCACCACCAGCAGCTATGGAGGTCTCAAAGTAACATTTATCATCATCATCACCATCATCAAGATGGCGGTGATGATGATGATGATCGGCAGACGGT GTTTGTCGGGAGCACGAGGAAGAGGTACGTGATTAGCTCCAAGTGCTTGAGCCACCCCGTCGTGAATGCTCTGATCACTCATGACGACGGTGGTAATGGT GGGACGGCTGTGGTGAAATGTGAGGTGGTTCTCTTTGACCACTTATTGTGGATGCTAGACAATGCTGAGATCACCGACGGTGATCTCAGCATCGAGTCCC TGCAGGAACTTGCGGATCTCTACGTGTTTTGA
AA sequence Show only first row Show all	>Lus10031790 pacid=23180750 polypeptide=Lus10031790 locus=Lus10031790.g ID=Lus10031790.BGIv1.0 annot-version=v1.0 MKKINLLLRKCKSLSKQLGRSSSYSSLRSSKNDHHHHQQLWRSQSNIYHHHHHHQDGGDDDDDRQTVFVGSTRKRYVISSKCLSHPVVNALITHDDGGNG GTAVVKCEVVLFDHLLWMLDNAEITDGDLSIESLQELADLYVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12955			SAUR-like auxin-responsive pro...		Lus10031790 [exp]	0	1
AT1G23390			Kelch repeat-containing F-box ...		Lus10013033 [exp]	3.5	0.9525
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008938 [exp]	4.7	0.9590
AT3G59530		LAP3	LESS ADHERENT POLLEN 3, Calciu...		Lus10019377 [exp]	7.1	0.9418
AT1G05310			Pectin lyase-like superfamily ...		Lus10010470 [exp]	9.8	0.9462
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10008635 [exp]	10.4	0.9427
AT5G15870			glycosyl hydrolase family 81 p...		Lus10042526 [exp]	13.1	0.9369
AT3G59310			Eukaryotic protein of unknown ...		Lus10026744 [exp]	16.9	0.9362
AT5G15870			glycosyl hydrolase family 81 p...		Lus10042525 [exp]	17.0	0.9217
AT1G70420			Protein of unknown function (D...		Lus10002380 [exp]	18.2	0.9398
AT4G12350	MYB	ATMYB42	myb domain protein 42 (.1)		Lus10024589 [exp]	18.3	0.9377

Compare expression of checked genes

Lus10031790 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.