Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79080 400 / 2e-133 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 222 / 7e-65 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G04760 196 / 3e-55 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62670 139 / 4e-35 RPF2 rna processing factor 2 (.1) AT5G65560 139 / 2e-34 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 137 / 3e-34 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 136 / 9e-34 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63130 135 / 1e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 135 / 2e-33 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 134 / 2e-33 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031792 [exp] 468 / 2e-160 AT1G79080 539 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031215 [exp] 466 / 1e-159 AT1G79080 544 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031216 [exp] 390 / 5e-130 AT1G79080 479 / 3e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031793 [exp] 323 / 2e-105 AT1G79080 387 / 3e-130 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 150 / 5e-38 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 150 / 5e-38 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017684 [exp] 149 / 6e-38 AT4G28010 596 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013841 [exp] 148 / 2e-37 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038974 [exp] 142 / 1e-35 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G144300 [exp] 447 / 8e-152 AT1G79080 742 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G457300 [exp] 432 / 4e-146 AT1G79080 712 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G109500 [exp] 222 / 4e-65 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G047000 [exp] 181 / 4e-50 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.019G019300 [exp] 181 / 6e-50 AT3G04760 776 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G046000 [exp] 151 / 7e-39 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G137200 [exp] 148 / 9e-38 AT1G13630 805 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.004G013300 [exp] 146 / 5e-37 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046200 [exp] 144 / 6e-37 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 143 / 2e-36 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10031791 pacid=23180579 polypeptide=Lus10031791 locus=Lus10031791.g ID=Lus10031791.BGIv1.0 annot-version=v1.0 ATGGCTGCTTGTGGATTGCTTTCCCATTTCCCTAATAATCTCCGCTCGCTCTCACTCAACAATGGCTTCAGCAAAGCTTTATCCACTACCCACATCACAA TTTCCCGCAAAGACTCTGCCTTGACACCACCCATCTGGAGGAAGACCGCCAGCAGCAGAAAAAACAGCAGCAAAGAGGAATCCAGATTGAAAAAGGATTC AATAGTTTTCAAGGGGGAAACTTTGGATATTTCCCAGGCAAAGCAGCTGATTTCAGATTCTTGTAAAACTGACAAATGGAAGAACGCTTTAAGAGTGATG GAAATGCTGATTGCATCAAAGATCACTGTTGATTCCGGTTTTACTAATCTGTTAGTAGACGATCTATGTCGAAGAGGATGTATAGGGCACGCGATGCAGC TTGTGAACAAATTGGAGAAACTGAGCTTTCCAACTGATGCAGATACTTATGGCTACATTGTAAAATCACTTTGTAAGCACTGGAGCTTGGATCAATGCCT GCAGTACACAAACCGGCAGGTACAGAAAGGATTCGTACCGAAGACATTCGCTCATAATAATCCTTCGTTGCTTCGATTGGCGTGTAAAGAGAGAGGAGCT GACAAGGCTATGAACCTCTTTGATCATGATGATGCAAAGGATTTGTCTACTTGTTACAACGTGTTGCTCTCCGGTTTTTGCAGCGAAGGCCGGTTACACG ATGCGATTCGTTTGTTCCGTGATTTGCAGGATCCGAACGTTACTAGCTATAACATCTTGCTTAGCGCTCTTTGGAACGACGCGAAATGGGAAGAGTCGAA TTTCCTGCTCGACGAGATGAATGGAGACGGGAAATTTCCATCGGATGTCACGTACATTGCGCTGATTAGATCACTGGCGGTCCATGGCAAGACCGATCTT GCGATCCGTATGCTGGATAGAATCGAGGAGGAGAAGAAGACTGCATCGATGTACAATCCGGTCATAGCTCGTCTTTCGCTAGAAGGTGATGTCGATACGG TCAGCAGCGTGATATACAGGATGAGATACGAGAACGTGGAACCGGACAAGTGGACGTATAGCGCGATAAGTCTGCTCTTCTCCTGCGACGACGAGGATGC TTACTCGATTTTCTACACCATGGCATCTGAATCATCCTCGATCAGCTCGATCAGTACGTTCTTCAACCGTGTGATTTCGAGTTTGTGCAGAACCGGAGAC ACCTATGCTGCATTCAAGCTTCTGTATGAACTGGCTAAGAAGAAGACCGATTTTGCGCCCGATCCACCGACGTATTCGACGATGATGAAAGGGCTGTGTT CCGAAGGGATGGTGGAAGCGGCAATGAAGGTGTTGCCGGTGCTGGAAGAGTACGGAGGATATGTACCGAACAAGGACAACTACAACGCGCTTATTCGAGG CCTGTGCAAGGCTAGGAGGGCCAGCTTGGCGTTGGAGGTTTTCGAGACGATGATCGGGAAAGGATATGTGCCGAATGCAGCGACATATACTATTATCGTT GGTGGGATTGTGTATGAAGGTGAGATGGAGCTGGCAGCATCAGTTCTTGGAGATTTGTATCGATGTGGGTTGGTTAAACGTGATACTGCTGAAAGGCTTG TTTTGCAGTATGGCCTGAAAAGAGTTTCCTTGTAA
AA sequence Show only first row Show all	>Lus10031791 pacid=23180579 polypeptide=Lus10031791 locus=Lus10031791.g ID=Lus10031791.BGIv1.0 annot-version=v1.0 MAACGLLSHFPNNLRSLSLNNGFSKALSTTHITISRKDSALTPPIWRKTASSRKNSSKEESRLKKDSIVFKGETLDISQAKQLISDSCKTDKWKNALRVM EMLIASKITVDSGFTNLLVDDLCRRGCIGHAMQLVNKLEKLSFPTDADTYGYIVKSLCKHWSLDQCLQYTNRQVQKGFVPKTFAHNNPSLLRLACKERGA DKAMNLFDHDDAKDLSTCYNVLLSGFCSEGRLHDAIRLFRDLQDPNVTSYNILLSALWNDAKWEESNFLLDEMNGDGKFPSDVTYIALIRSLAVHGKTDL AIRMLDRIEEEKKTASMYNPVIARLSLEGDVDTVSSVIYRMRYENVEPDKWTYSAISLLFSCDDEDAYSIFYTMASESSSISSISTFFNRVISSLCRTGD TYAAFKLLYELAKKKTDFAPDPPTYSTMMKGLCSEGMVEAAMKVLPVLEEYGGYVPNKDNYNALIRGLCKARRASLALEVFETMIGKGYVPNAATYTIIV GGIVYEGEMELAASVLGDLYRCGLVKRDTAERLVLQYGLKRVSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79080			Pentatricopeptide repeat (PPR)...		Lus10031791 [exp]	0	1
AT5G04590		SIR	sulfite reductase (.1)		Lus10027360 [exp]	1.0	0.9736
AT3G14930		HEME1	Uroporphyrinogen decarboxylase...		Lus10043079 [exp]	2.8	0.9670
AT3G12110		ACT11	actin-11 (.1)		Lus10001694 [exp]	2.8	0.9531
AT3G04760			Pentatricopeptide repeat (PPR-...		Lus10014660 [exp]	3.2	0.9531
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Lus10000862 [exp]	3.5	0.9524
AT3G46610			Pentatricopeptide repeat (PPR-...		Lus10014577 [exp]	3.9	0.9536
AT3G46610			Pentatricopeptide repeat (PPR-...		Lus10032109 [exp]	7.7	0.9393
AT3G25920		RPL15	ribosomal protein L15 (.1)		Lus10031417 [exp]	7.9	0.9495
AT3G25920		RPL15	ribosomal protein L15 (.1)		Lus10010916 [exp]	8.0	0.9504
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Lus10014819 [exp]	10.2	0.9506

Compare expression of checked genes

Lus10031791 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.