Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79080 538 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 315 / 4e-100 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G04760 283 / 7e-88 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G53700 212 / 5e-60 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12775 206 / 1e-58 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 206 / 1e-58 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62930 197 / 1e-55 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63130 197 / 2e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12620 196 / 3e-55 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 194 / 6e-54 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031215 [exp] 1110 / 0 AT1G79080 544 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031216 [exp] 553 / 0 AT1G79080 479 / 3e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031791 [exp] 473 / 4e-162 AT1G79080 406 / 5e-136 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031793 [exp] 437 / 4e-150 AT1G79080 387 / 3e-130 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014660 [exp] 223 / 3e-65 AT3G04760 522 / 3e-180 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10000554 [exp] 216 / 1e-62 AT3G04760 535 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10026558 [exp] 205 / 7e-57 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013841 [exp] 204 / 2e-56 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 197 / 9e-55 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G144300 [exp] 617 / 0 AT1G79080 742 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G457300 [exp] 616 / 0 AT1G79080 712 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G109500 [exp] 323 / 3e-103 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.019G019300 [exp] 268 / 2e-82 AT3G04760 776 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G047000 [exp] 261 / 9e-80 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.016G025600 [exp] 218 / 2e-62 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 212 / 2e-60 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271200 [exp] 210 / 2e-60 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046100 [exp] 208 / 2e-59 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.010G217600 [exp] 207 / 3e-58 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10031792 pacid=23180680 polypeptide=Lus10031792 locus=Lus10031792.g ID=Lus10031792.BGIv1.0 annot-version=v1.0 ATGAATGTTCTGTTCAACAGAGTGACGAACTTACCGACGCCATTTCCAGCTACTGGAGGGAATAATAATATAATTCGCTCTGTCTCGCTCAACAATGGCT TCAGTAAGGTTTTGGCTTCAACCCACATCACAATTCCTTCAAAGGACTCTGGTTTGCCATTATCCAGCTGGATAAACAAAGAGGTTAGGGTTAGGATTAC AGAAGAGTTTGATTCGATGGCGAGCAAGATTTCAAAAGGGGGAAAGCCTGATATTTACGAGTCAATGCAGCTGATCTACAATCTGTGCAAGGATGAAAAC TTCGAAAAGGCCGTGAGAGTGATGCAATTGCTAATTGAATCGAAGAGCATTCCTGATTCGCGGTCCTGCAATTACTTGGTGAGCAATCTCTGCAAGAGTG GGGAATTTAGGTATGCAATGCAGGTAGTTGAAAAAATGGGAGAGTATAAATTTCCAATCAATGCCAATACTTATAATTCTCTTGTCAAAGTGCTTTCGAC GCAAGGAGAATTCGAGCAATGCTTGCAGTTCATCAACAGACTGATCCAGAAAGGTCTCGTACCGAACACATTCGCGCATTCCTCCTTACTCGAACGAGTT TTCAAAGAGAGAGGAGTTGACGAGGCGTTGAAGGTCTTCGACGAGATCATGGCCAAAGGCTGGAAGCCTAATTTGGTCAGCTACAACATTTTACTCACCG GACTTTGCAACGAAGGTAGGGTTGATGAAGCGTTTCGTCTGTTCCGAGAATTGCCTTTGATCGGTTACAATCCGAATGTTGTGACGTACAACATTCTTCT CAGAACTCTTGTGAAAGATCAGAAATGGGAAGAAGCAAATGCGTTGTTAAGTGAGATGAATGCACAGGGGAAGTCACCATCTGCTGTAACGTACAACACA CTGATTACTTGGCTTGCAAGGCATGGCAGGACTGATCACGCGATTCACGTTTTCGACGAGATGGAGAGGAGGAATTTTCTTGTTACGACTGCTTCATACA ATCCGATCATAGCCGGTCTTTCGAGACAAGGAAAAATCGACAAAGTTGTGAAATGTCTAGACCGGATGATGTCTCGTAAATTGGGGCCGAGCGATGGCAC CTATGGCGCCATCGCTCTGCTCTGCGACGGAGGGAAAGTGGAACAAGCATATACCATGATTCAGTACTTGCGATCGAGGCAGAGCCACTCGACTCATAAC TTCTTCAAAGGTGTGATTGCGAGCTTGTGTAGAAAGGGAAGCACTTACGCTGCATTTCAGCTGCTGTATAGGATGACGAAGAACGATGATTTCACGCCTG ATCCGCAATCGTATTCGATTTTAATGAAGGGGTTGTGTCGAGAGGGAATGCTGGACGAGGCTTTCGGGGTTTTTCAAGTGCTGGAAGAGTATGGATATGT GGCTAATTTGGAGAATTTCAACGCGTTGATTCAAGGTCTCTGTAAGGCGAGGAGAACCGATCTTTCGTTGGAGGTTTTTGAGGTGATGGTCGGGAAAGGG TATATGCCGAGTTCGGCTACTTATAGTATGATTGTGAGTGGGATTGTTCATGAAGAGATGAAGGAGTTGGGAGCTGAAGTTCTGAAAGATCTGTATCGGA GGGGGGTGTTGAGTCGCAATTGTGTTAAAAAGATTGTGGTGCAACATGAACTTGAAGGGCTGCCCTTGTAA
AA sequence Show only first row Show all	>Lus10031792 pacid=23180680 polypeptide=Lus10031792 locus=Lus10031792.g ID=Lus10031792.BGIv1.0 annot-version=v1.0 MNVLFNRVTNLPTPFPATGGNNNIIRSVSLNNGFSKVLASTHITIPSKDSGLPLSSWINKEVRVRITEEFDSMASKISKGGKPDIYESMQLIYNLCKDEN FEKAVRVMQLLIESKSIPDSRSCNYLVSNLCKSGEFRYAMQVVEKMGEYKFPINANTYNSLVKVLSTQGEFEQCLQFINRLIQKGLVPNTFAHSSLLERV FKERGVDEALKVFDEIMAKGWKPNLVSYNILLTGLCNEGRVDEAFRLFRELPLIGYNPNVVTYNILLRTLVKDQKWEEANALLSEMNAQGKSPSAVTYNT LITWLARHGRTDHAIHVFDEMERRNFLVTTASYNPIIAGLSRQGKIDKVVKCLDRMMSRKLGPSDGTYGAIALLCDGGKVEQAYTMIQYLRSRQSHSTHN FFKGVIASLCRKGSTYAAFQLLYRMTKNDDFTPDPQSYSILMKGLCREGMLDEAFGVFQVLEEYGYVANLENFNALIQGLCKARRTDLSLEVFEVMVGKG YMPSSATYSMIVSGIVHEEMKELGAEVLKDLYRRGVLSRNCVKKIVVQHELEGLPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79080			Pentatricopeptide repeat (PPR)...		Lus10031792 [exp]	0	1
AT1G79080			Pentatricopeptide repeat (PPR)...		Lus10031215 [exp]	1.0	0.9653
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015110 [exp]	3.9	0.9571
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Lus10005553 [exp]	5.7	0.9621
AT3G13120			Ribosomal protein S10p/S20e fa...		Lus10007111 [exp]	6.9	0.9535
AT5G66470			RNA binding;GTP binding (.1)		Lus10014289 [exp]	10.2	0.9542
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10041469 [exp]	10.4	0.9562
AT4G38160		PDE191	pigment defective 191, Mitocho...		Lus10026571 [exp]	12.5	0.9499
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10039092 [exp]	13.4	0.9540
AT3G13120			Ribosomal protein S10p/S20e fa...		Lus10016604 [exp]	15.3	0.9529
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10038770 [exp]	15.4	0.9539

Compare expression of checked genes

Lus10031792 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.