Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79080 365 / 1e-121 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 201 / 1e-58 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G04760 201 / 2e-58 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62670 162 / 3e-44 RPF2 rna processing factor 2 (.1) AT1G63130 160 / 1e-43 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 160 / 2e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 159 / 7e-43 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 154 / 3e-41 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12700 154 / 8e-41 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT5G39710 154 / 1e-40 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031216 [exp] 759 / 0 AT1G79080 479 / 3e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031215 [exp] 414 / 5e-141 AT1G79080 544 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031792 [exp] 410 / 1e-139 AT1G79080 539 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031791 [exp] 300 / 6e-97 AT1G79080 406 / 5e-136 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014245 [exp] 144 / 1e-37 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10015110 [exp] 142 / 3e-37 AT1G09900 347 / 1e-112 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10026558 [exp] 142 / 1e-36 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005303 [exp] 142 / 1e-36 AT1G30290 1037 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013841 [exp] 140 / 6e-36 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G144300 [exp] 396 / 4e-134 AT1G79080 742 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G457300 [exp] 382 / 1e-128 AT1G79080 712 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G047000 [exp] 197 / 5e-57 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.002G109500 [exp] 196 / 6e-57 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.019G019300 [exp] 187 / 2e-53 AT3G04760 776 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G014500 [exp] 156 / 2e-41 AT1G09820 696 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G046000 [exp] 155 / 2e-41 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G045000 [exp] 149 / 1e-39 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034200 [exp] 149 / 1e-39 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 149 / 2e-39 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10031793 pacid=23180685 polypeptide=Lus10031793 locus=Lus10031793.g ID=Lus10031793.BGIv1.0 annot-version=v1.0 ATGCCTCCTCCGGATTTACGGACTTGCAGTTACTTGGTGAACAGTCTTACCAGGAGCGGCTATGTCGGGGAAGCGATGCTGATAGTGGAGAAGATGGAAG AAGTTGGGTTTCCGACGAATTCGAATACGTACAATTGCATAATTCGAGGGCTTGCCATGGATGGTGGGAGCTTCGATGAGTGTTTGAAATTCACAAACAA GCTTGTGGCGAAGGGGGTGTTGCCCAGTTGGGAGCCTGGCTTGATTAGCTACAATGTTCTTGTTACCGGACTCTGCAACGAAGGTAGGCTGGATGATGCA GTTCGCTTGTTCCGGGAGCTTCCATCGAAAGGCATCGATCCGACCGTCGTTAGCTACAACATCTTGCTGAAGAGCCTCTGCCATGAAGGCAAGTGGGAGG AAGCAAATGCATTGCTGGCCGAGATGAACGCCGAAGCGAAATCTCCATCCGTCGTCACGTACAACATGCTGATAAGTTCCCTGGTATTCCACGGTAAGAC GGAGGACGCGATTAGACTGTTCCGCGAGATGGAGAGAGGGAAATTCAAGCGCAAGCTCGCCACGCCAGCTTACGACCCGATCATAGCTTGCCTCGCCAAA CAAGGTAAGGCCGATATGATCATCGAGTTTCTAGATCATATGATATCTCGAAACATAGCTCCGAAAGATGAAACGTACGCTTCGGTCAGCTTGCTGACCG ATGCAGGGAAGGTCCAAGAAGCGTATTCGATTATCCGAAGCTTGGCCTCGACAAAGAAGTGCTCCATCCACAACTTCTGGTATTACGTGCTCTGCTGCCT GTGCGAGAAGGGAAGAACGTACGCTGCGTTCCAGCTTCTTTACGAGATTGTCAAGGACGATAGGTTCGTGCCTGATCCACCGGCGTATTCGACGTTGATG AAAGGGCTGTGTGTCGAAGGGATGCTGAGCGTGGCGTTGGAGATCTTTGCAGCGCTGGTGAAAGAGTACGGATATGTTCCCAAGCCAGGGAACTTCAACA CTATTATGCTCGGGCTATGCAAGGCCGGGAGAACCGATCTGTCGTTGCAGGTTTTCGAGGATATGATCAGGAAGGGAATCCGGGCTAACGACTCGACTTA TAACATTTTAGTTCAAGGGATTGTGAATGAAGGTGGGAATGAGTTGGCAGGTGGAGTAGTGAAGGATTTGTTTCAGATCGGGGCAGTAAGTCGCGATGTT GTCCGGAGGTTTTCCCTGCGTTATGACCTGGATGTGTAA
AA sequence Show only first row Show all	>Lus10031793 pacid=23180685 polypeptide=Lus10031793 locus=Lus10031793.g ID=Lus10031793.BGIv1.0 annot-version=v1.0 MPPPDLRTCSYLVNSLTRSGYVGEAMLIVEKMEEVGFPTNSNTYNCIIRGLAMDGGSFDECLKFTNKLVAKGVLPSWEPGLISYNVLVTGLCNEGRLDDA VRLFRELPSKGIDPTVVSYNILLKSLCHEGKWEEANALLAEMNAEAKSPSVVTYNMLISSLVFHGKTEDAIRLFREMERGKFKRKLATPAYDPIIACLAK QGKADMIIEFLDHMISRNIAPKDETYASVSLLTDAGKVQEAYSIIRSLASTKKCSIHNFWYYVLCCLCEKGRTYAAFQLLYEIVKDDRFVPDPPAYSTLM KGLCVEGMLSVALEIFAALVKEYGYVPKPGNFNTIMLGLCKAGRTDLSLQVFEDMIRKGIRANDSTYNILVQGIVNEGGNELAGGVVKDLFQIGAVSRDV VRRFSLRYDLDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79080			Pentatricopeptide repeat (PPR)...		Lus10031793 [exp]	0	1
AT1G79080			Pentatricopeptide repeat (PPR)...		Lus10031216 [exp]	1.7	0.9080
AT5G22510		INV-E, At-A/N-I...	Arabidopsis alkaline/neutral i...		Lus10043375 [exp]	8.7	0.8300
AT4G33030		SQD1	sulfoquinovosyldiacylglycerol ...		Lus10013513 [exp]	13.6	0.8385
AT3G52750		FTSZ2-2	Tubulin/FtsZ family protein (....		Lus10014196 [exp]	16.1	0.8229
AT3G25920		RPL15	ribosomal protein L15 (.1)		Lus10010916 [exp]	20.2	0.8512
AT1G26761			Arabinanase/levansucrase/inver...		Lus10037153 [exp]	21.9	0.8329
AT5G57030		LUT2	LUTEIN DEFICIENT 2, Lycopene b...		Lus10017156 [exp]	23.4	0.8413
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10000063 [exp]	24.1	0.8442
AT5G06290		2CPB, 2-CysPrxB...	2-CYS PEROXIREDOXIN B, 2-cyste...		Lus10016969 [exp]	26.9	0.8497
AT5G48730			Pentatricopeptide repeat (PPR)...		Lus10022787 [exp]	33.2	0.8295

Compare expression of checked genes

Lus10031793 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.