Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79060 163 / 1e-45 unknown protein AT1G56020 160 / 9e-45 unknown protein AT3G12970 154 / 2e-42 unknown protein AT3G05980 49 / 2e-06 unknown protein AT5G19340 42 / 0.0004 unknown protein AT5G66800 41 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031218 [exp] 479 / 1e-167 AT1G79060 253 / 7e-80 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G098300 [exp] 228 / 2e-69 AT3G12970 162 / 3e-45 unknown protein Potri.007G065200 [exp] 219 / 2e-66 AT1G79060 119 / 1e-29 unknown protein Potri.007G042600 [exp] 47 / 3e-06 AT5G66800 121 / 4e-35 unknown protein Potri.009G102800 [exp] 44 / 5e-05 AT4G34419 95 / 2e-25 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031795 pacid=23180813 polypeptide=Lus10031795 locus=Lus10031795.g ID=Lus10031795.BGIv1.0 annot-version=v1.0 ATGGCCTCAGCCTGCGTCAACAACATCAGCATGTCGCCGGAGCGGTTCCCGTCCGGCGGCGGTAAATACTCCTCGTACGGCTGGCTCAGCCCCCGCATTT CCTTCAGCCGCGACGAGAGCCCGAAGCAACAACCTCCGCCGCCGCTGGCTGCGGCGGCACAAGAAGTGCAAGATCTCCCCGACTTCGAGTTCCGTCTCGA CGATCCCGTCGGAATGCTCCCGGCGGACGAGCTCTTCTCCGACGGGAAACTGGTGCCTACACAGCTGACGAACATGAAGCTGCCGTTTCCATCGGAGGGG GAGAAATCTGGCCGGAGGATGGACGTATCTGGAAACAGTACTGATAATACAATAACTGACCAGTACTTGTTCTCTCCCAAGGCGCCTCGATGTTCGAGCC GGTGGAAAGAGTTGCTCGGCTTGAGGAAGTTTTACCATAATACCCCCAACAAGGCGGCAGCGGCTGGAGGAGAGAGCCTCAAAACGGCGACGTTCCTGTC GTCTTCTTCATCTTCTTCGAATTCGAATAACCAGCAGCAGAGATCACTGATGAGGCATTTTCTACACAGGAACTCCAAATCCTGCAGCAGCTGCCATTCC TCCTCGCTGGACAGCTCGCTCAGCTTGCCATTGCTGAAGGATCTCGACTGCGAGTCCGTTTCAATCTCTTCCTCCAGGTTATCCCTCTCTTCCTCGTCTT CAAGCCACGAGCACGAAGATCTACCGAGGCTATCACTCGATTCGGAGAAGCAGCCGAATCCGAATCTGAACATCAGCTTGAACTTCAACACGCTGCAGAG TCCGAATCCGTTCGTCCTCAATCGCAATCCAACTGGAAACAACAACCCGCCGAGGATGAGAATGGTGAAGCCGAGAGGAGGAGGCGAGGTTAACGCTTCT GACGCCGGAGGAGCAAGCAGAGTGGGGAGGAGTCCGATAAGGAGATCCGCCGCCTCCGGCGGCGGCGGAGGAGAATCAGGTGGGGTGACGAGCAGGGGGG TTTCGGTAGACAGTCCGCGGCTGAATTCGTCAGGCAAGTTGATATTCGAGAGCTTGGAGAGGAGCTCCAGTAGTCCAAGTACCTTCAATGGTGGGCCAAG GCACAAGATCAAAGGAATGGAGAGGTCCTACTCAGCAAACGTCAGGGTCACTCCTGTTCTTAACGTCCCCGTTTGTTCCCTACGAGGTTCGTCCAAATCC GGGTCGGTTTTCGGGTTCTTCTCATCATCCTCCGCCCCACAGAAACGAGACAACGGCGGAGGAGGCATCCACAGACAACAAAGCTCCGGCGGAGGAAACA GCAGAGCCAACAACACCAAAAATCAAATCTCACCATCTTGTTAA
AA sequence Show only first row Show all	>Lus10031795 pacid=23180813 polypeptide=Lus10031795 locus=Lus10031795.g ID=Lus10031795.BGIv1.0 annot-version=v1.0 MASACVNNISMSPERFPSGGGKYSSYGWLSPRISFSRDESPKQQPPPPLAAAAQEVQDLPDFEFRLDDPVGMLPADELFSDGKLVPTQLTNMKLPFPSEG EKSGRRMDVSGNSTDNTITDQYLFSPKAPRCSSRWKELLGLRKFYHNTPNKAAAAGGESLKTATFLSSSSSSSNSNNQQQRSLMRHFLHRNSKSCSSCHS SSLDSSLSLPLLKDLDCESVSISSSRLSLSSSSSSHEHEDLPRLSLDSEKQPNPNLNISLNFNTLQSPNPFVLNRNPTGNNNPPRMRMVKPRGGGEVNAS DAGGASRVGRSPIRRSAASGGGGGESGGVTSRGVSVDSPRLNSSGKLIFESLERSSSSPSTFNGGPRHKIKGMERSYSANVRVTPVLNVPVCSLRGSSKS GSVFGFFSSSSAPQKRDNGGGGIHRQQSSGGGNSRANNTKNQISPSC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79060			unknown protein		Lus10031795 [exp]	0	1
AT1G79060			unknown protein		Lus10031218 [exp]	1.4	0.9631
AT1G14900		HMGA	high mobility group A (.1)		Lus10004056 [exp]	1.7	0.9758
AT5G48480			Lactoylglutathione lyase / gly...		Lus10009579 [exp]	3.2	0.9520
AT1G63470	AT-hook		AT hook motif DNA-binding fami...		Lus10008533 [exp]	3.3	0.9328
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10002538 [exp]	4.9	0.9316
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10020352 [exp]	5.3	0.9527
AT1G04150			C2 calcium/lipid-binding plant...		Lus10000164 [exp]	6.0	0.9360
AT1G14900		HMGA	high mobility group A (.1)		Lus10002284 [exp]	6.7	0.9568
AT1G63470	AT-hook		AT hook motif DNA-binding fami...		Lus10008535 [exp]	7.2	0.9315
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10009533 [exp]	8.1	0.9480

Compare expression of checked genes

Lus10031795 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.