Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19630 300 / 5e-104 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031220 [exp] 421 / 7e-152 AT5G19630 331 / 3e-116 alpha/beta-Hydrolases superfamily protein (.1) Lus10021039 [exp] 242 / 8e-81 AT5G19630 267 / 5e-91 alpha/beta-Hydrolases superfamily protein (.1) Lus10004187 [exp] 209 / 2e-68 AT5G19630 230 / 8e-77 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G013700 [exp] 339 / 2e-119 AT5G19630 324 / 9e-114 alpha/beta-Hydrolases superfamily protein (.1) Potri.T056064 [exp] 336 / 4e-118 AT5G19630 293 / 3e-101 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G212400 [exp] 336 / 4e-118 AT5G19630 293 / 3e-101 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G191700 [exp] 66 / 4e-13 AT5G19630 77 / 2e-17 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF02129 [flax] [poplar] Peptidase_S15 X-Pro dipeptidyl-peptidase (S15 family)
Representative CDS sequence Show only first row Show all	>Lus10031797 pacid=23180714 polypeptide=Lus10031797 locus=Lus10031797.g ID=Lus10031797.BGIv1.0 annot-version=v1.0 ATGTCGAACTACACAGTTGAGTCCACCACAGTCGAGCCAACCGACGGAGCAGCCAAACTCCACACAAGGATCTTCAAACCCAAACAAGAAGAAGATCATC AGCCAAGCTCCGTACCAGAAGACTTGGTGATTGTACTTGTTCACCCGTTCACGGTCATGGGTGGCTGTCAAGCTCTTCTCAAAGGGATGTCGATTGGATT AGCTCAGAGAGGGTTTAAAGCCGTGACCTTTGACATGAGAGGCGCCGGTAGATCCACAGGAAGGCCGTCGCTCACTGGATTTTCTGAAATCAAGGATGTG ATCGCCGTCTGCAAGTGGGTTTCTGAGAATCTTTCCACCAAAAGGATTTTGTTGGTCGGTTCCTCAGCAGGGGCGCCGATCGCCGGTTCTTCTGTTGATC AGATCAAGGTAGTTGTCGGCTACGTGAGCATAGGCTACCCTTTTGGAATGGTGGCCTCCGTGCTATTCGGAAGGCACCACAAGTCCATTCTACAGTCTCC GAAACCGAAGCTCTTCATCATGGGAACCGAGGACGGGTTCACGAGTGTCAAACAGCTCCAGAACAAGTTGAAGTCTGCAGCTGGTCGTGTCGAGACTCAT TTTATTGAAGGCGCCGGCCATTTCCAAATGGAAGGTCCCGTATTTGACGCGCAGATGGCTGACCTCATCGCCTTGTTTGCAGCATCTTTGTGA
AA sequence Show only first row Show all	>Lus10031797 pacid=23180714 polypeptide=Lus10031797 locus=Lus10031797.g ID=Lus10031797.BGIv1.0 annot-version=v1.0 MSNYTVESTTVEPTDGAAKLHTRIFKPKQEEDHQPSSVPEDLVIVLVHPFTVMGGCQALLKGMSIGLAQRGFKAVTFDMRGAGRSTGRPSLTGFSEIKDV IAVCKWVSENLSTKRILLVGSSAGAPIAGSSVDQIKVVVGYVSIGYPFGMVASVLFGRHHKSILQSPKPKLFIMGTEDGFTSVKQLQNKLKSAAGRVETH FIEGAGHFQMEGPVFDAQMADLIALFAASL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19630			alpha/beta-Hydrolases superfam...		Lus10031797 [exp]	0	1
AT2G33700			Protein phosphatase 2C family ...		Lus10030731 [exp]	3.2	0.8138
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10028157 [exp]	7.7	0.8201
AT5G58950			Protein kinase superfamily pro...		Lus10015314 [exp]	8.8	0.8038
AT3G49800			BSD domain-containing protein ...		Lus10019271 [exp]	10.7	0.8089
AT5G07270		XBAT33	XB3 ortholog 3 in Arabidopsis ...		Lus10027441 [exp]	11.5	0.7900
AT2G37110			PLAC8 family protein (.1)		Lus10023176 [exp]	15.4	0.8128
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Lus10017163 [exp]	18.8	0.8096
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10020847 [exp]	21.7	0.8095
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10036739 [exp]	26.2	0.7962
AT3G15760			unknown protein		Lus10019413 [exp]	29.8	0.7579

Compare expression of checked genes

Lus10031797 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.