Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13020 414 / 1e-143 AtEML3, ACK1 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) AT2G44440 290 / 2e-94 AtEML4 EMSY-like 4, Emsy N Terminus (ENT) domain-containing protein (.1) AT5G06780 269 / 7e-88 AtEML2, ACK4 EMSY-like 2, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2) AT3G12140 270 / 2e-87 AtEML1, ACK3 EMSY-like 1, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.3) AT5G20030 51 / 6e-07 Plant Tudor-like RNA-binding protein (.1) AT3G57960 49 / 1e-06 Emsy N Terminus (ENT) domain-containing protein (.1) AT3G57970 46 / 2e-05 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) AT1G80810 43 / 0.0003 Tudor/PWWP/MBT superfamily protein (.1.2) AT1G15940 42 / 0.0006 Tudor/PWWP/MBT superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031221 [exp] 731 / 0 AT5G13020 440 / 7e-154 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10031223 [exp] 423 / 2e-146 AT5G13020 459 / 9e-161 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10031799 [exp] 403 / 4e-139 AT5G13020 417 / 1e-144 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10004188 [exp] 276 / 5e-90 AT5G13020 321 / 2e-107 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10021038 [exp] 234 / 2e-74 AT5G06780 290 / 3e-97 EMSY-like 2, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2) Lus10000040 [exp] 117 / 1e-31 AT5G13020 149 / 6e-45 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10014715 [exp] 50 / 1e-06 AT4G32440 122 / 1e-31 Plant Tudor-like RNA-binding protein (.1.2.3) Lus10003091 [exp] 49 / 5e-06 AT5G20030 112 / 6e-28 Plant Tudor-like RNA-binding protein (.1) Lus10024835 [exp] 45 / 4e-05 AT4G32440 123 / 1e-32 Plant Tudor-like RNA-binding protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G013800 [exp] 430 / 3e-149 AT5G13020 439 / 2e-152 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.T070080 [exp] 418 / 3e-144 AT5G13020 456 / 3e-159 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.003G212300 [exp] 415 / 3e-143 AT5G13020 455 / 5e-159 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.009G022900 [exp] 377 / 1e-128 AT5G13020 431 / 4e-150 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.001G229000 [exp] 362 / 7e-123 AT5G13020 413 / 1e-142 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.006G191400 [exp] 282 / 2e-92 AT5G13020 332 / 5e-112 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.016G047600 [exp] 244 / 7e-78 AT5G13020 353 / 3e-120 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.006G250600 [exp] 51 / 7e-07 AT4G32440 272 / 4e-88 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.018G030500 [exp] 50 / 2e-06 AT4G32440 273 / 2e-88 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.005G216200 [exp] 49 / 2e-06 AT5G20030 96 / 4e-22 Plant Tudor-like RNA-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03735 [flax] [poplar] ENT ENT domain
Representative CDS sequence Show only first row Show all	>Lus10031798 pacid=23180600 polypeptide=Lus10031798 locus=Lus10031798.g ID=Lus10031798.BGIv1.0 annot-version=v1.0 ATGTATGAACATTCTGATAGCAGTGGGACAGATGATGACCTGCCATCACATCGAAATAGATTCCAGTCTGGTGTGCGAACCGCAGGGAACGGAAGACCTG CTCCCCTGGCAAGGATGCACAGTGATATGGAAGCTCAAATTCACACTATTGAGCTAGAAGCATATAGCTCTGTTCTGTTCGCTTTTAAAGTCCAGTCAGA TGTCATCTCTTGGGAAAAAGACAGCTTAATGACAAACCTTAGGAAAGAGTTGAGAGTGTCAAATGAAGAGCATAAAGAACTTCTGTCACGGCTCTATAAC GATGATACCGTCCAAAGAATGAGGGAATGGAGAATGGTGAATGGGAATCAACCGGGCATGCAAAATTCTACTCAGCTTGCTCAGGATCATGTTCCTAATC CTTCCTTTTCTGGATCACGGAAGAAGCAGAAAACATCAAAGCCGGCCGGTTCGTTATCCATAGGTGGTCTTCCTGCACTACACTCGCCAATGCAAGCATC TACCTCTGCCATAAGGCGAGGATCTCACCCTGCTTCTAGGAGCAAGAAGCTCCAGTCTTACCCATCTACAAACTGGAATGCTGGCAGGGGCCAAGTTGCT AACAGAGGATCTTTAGGTGCATTTCCGACCAATGAGCCTGCAACAGCTGCCAATTTTAATCCGTTAATCGGAAGGAAAGTTTGGACTCGGTGGCCTGAAG ATAATAATTTTTACGAGGCTGTGATCACCGACTACAATGCCACTAATGGGATGCATGTTTTGGTTTATGATATACACACTGCTGATGAAACATTGGAATG GGTTGATCTCAAAGAGATACCTCCTGGGGATATCAAATGGGAAGGCGACGAACCTTCCAATTCTCGTAAAGGTGGCCGCCCTGGACCTGGCAGGGAGAAT AAGAAGTCAATGATGCGTGCTGGCGCCGGTGCTGCCGGAAGGGGTAGAGGGACGAAGAAAGGCTCGAAAAAGGAGGTCCCGCCGCTATCACAAAATGGCG CTGGTAAAAGGGCAGCGGGCGACATCGAGATACTTCATACTGATACTTTAATCAAGGAGGTCGAAAAGGTCTTTGGTGCCAACTTTCCCGACCCAGTAGA GATTGAGAAAGCAAAGAAAGTGCTCGAAGATCATGAACATGCTCTTGTAGACGCAATTGCGAGACTCGAAGATGCTTCAGATGGTGAAAGTGGTAATACA TAA
AA sequence Show only first row Show all	>Lus10031798 pacid=23180600 polypeptide=Lus10031798 locus=Lus10031798.g ID=Lus10031798.BGIv1.0 annot-version=v1.0 MYEHSDSSGTDDDLPSHRNRFQSGVRTAGNGRPAPLARMHSDMEAQIHTIELEAYSSVLFAFKVQSDVISWEKDSLMTNLRKELRVSNEEHKELLSRLYN DDTVQRMREWRMVNGNQPGMQNSTQLAQDHVPNPSFSGSRKKQKTSKPAGSLSIGGLPALHSPMQASTSAIRRGSHPASRSKKLQSYPSTNWNAGRGQVA NRGSLGAFPTNEPATAANFNPLIGRKVWTRWPEDNNFYEAVITDYNATNGMHVLVYDIHTADETLEWVDLKEIPPGDIKWEGDEPSNSRKGGRPGPGREN KKSMMRAGAGAAGRGRGTKKGSKKEVPPLSQNGAGKRAAGDIEILHTDTLIKEVEKVFGANFPDPVEIEKAKKVLEDHEHALVDAIARLEDASDGESGNT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031798 [exp]	0	1
AT4G03020			transducin family protein / WD...		Lus10012779 [exp]	1.4	0.8429
AT1G78420			RING/U-box superfamily protein...		Lus10013709 [exp]	2.4	0.8330
AT1G26810		GALT1	galactosyltransferase1 (.1)		Lus10030467 [exp]	3.2	0.7854
AT5G50180			Protein kinase superfamily pro...		Lus10035233 [exp]	4.7	0.7738
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Lus10037678 [exp]	6.6	0.7984
AT1G52420			UDP-Glycosyltransferase superf...		Lus10037523 [exp]	6.9	0.7860
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10023696 [exp]	8.5	0.8282
AT4G22840			Sodium Bile acid symporter fam...		Lus10008914 [exp]	8.8	0.7686
AT1G10390			Nucleoporin autopeptidase (.1....		Lus10008288 [exp]	10.5	0.7941
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10002454 [exp]	15.1	0.7890

Compare expression of checked genes

Lus10031798 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.