Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13020 374 / 5e-128 AtEML3, ACK1 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) AT2G44440 292 / 3e-95 AtEML4 EMSY-like 4, Emsy N Terminus (ENT) domain-containing protein (.1) AT3G12140 280 / 3e-92 AtEML1, ACK3 EMSY-like 1, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.3) AT5G06780 273 / 3e-89 AtEML2, ACK4 EMSY-like 2, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2) AT3G57970 53 / 2e-07 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) AT5G20030 50 / 1e-06 Plant Tudor-like RNA-binding protein (.1) AT5G47690 46 / 4e-05 binding (.1.2.3) AT3G57960 44 / 8e-05 Emsy N Terminus (ENT) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031223 [exp] 702 / 0 AT5G13020 459 / 9e-161 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10031221 [exp] 405 / 1e-139 AT5G13020 440 / 7e-154 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10031798 [exp] 399 / 1e-137 AT5G13020 434 / 1e-151 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10004188 [exp] 307 / 1e-101 AT5G13020 321 / 2e-107 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10021038 [exp] 268 / 3e-87 AT5G06780 290 / 3e-97 EMSY-like 2, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2) Lus10000040 [exp] 148 / 2e-43 AT5G13020 149 / 6e-45 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10014715 [exp] 49 / 4e-06 AT4G32440 122 / 1e-31 Plant Tudor-like RNA-binding protein (.1.2.3) Lus10003091 [exp] 49 / 6e-06 AT5G20030 112 / 6e-28 Plant Tudor-like RNA-binding protein (.1) Lus10018332 [exp] 47 / 2e-05 AT4G31880 464 / 2e-149 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G013800 [exp] 437 / 6e-152 AT5G13020 439 / 2e-152 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.T070080 [exp] 433 / 4e-150 AT5G13020 456 / 3e-159 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.003G212300 [exp] 432 / 7e-150 AT5G13020 455 / 5e-159 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.009G022900 [exp] 354 / 1e-119 AT5G13020 431 / 4e-150 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.001G229000 [exp] 350 / 6e-118 AT5G13020 413 / 1e-142 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.016G047600 [exp] 315 / 3e-105 AT5G13020 353 / 3e-120 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.006G191400 [exp] 305 / 3e-101 AT5G13020 332 / 5e-112 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.005G216200 [exp] 54 / 1e-07 AT5G20030 96 / 4e-22 Plant Tudor-like RNA-binding protein (.1) Potri.018G030500 [exp] 51 / 8e-07 AT4G32440 273 / 2e-88 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.002G046800 [exp] 51 / 9e-07 AT4G32440 138 / 3e-37 Plant Tudor-like RNA-binding protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03735 [flax] [poplar] ENT ENT domain
Representative CDS sequence Show only first row Show all	>Lus10031799 pacid=23180792 polypeptide=Lus10031799 locus=Lus10031799.g ID=Lus10031799.BGIv1.0 annot-version=v1.0 ATGCCAAGGATAAGTGATATGGAAATTCAAATTCACAATATCGAACAAGAAGCATATAGATATGTGCTGCGGGCATTCAAAGCTCAATCAGATGCTATTA CCTGGGAAAAAGAAAGCTTAATAACAGAACTCAGAAAGGAGTTGAGAGTGTCAGACGAGGAGCATAGGGAACACTTATCCAGGGTTAACAATGACGACAT GATTCGGAGGATAAGGGAATGGAGAAAGACTAGTGGATCTCAATCAGGCATGCCAAACAACACCCAGCCTGGCCATGATCGTGCGCCTAGTCCCTCTGTT TCAGCATCCCGCAAGAAGCAGAAAACCTCACAGTCGGTTGCTTCGTTATCATCCATGGGTGCCCCTTCTCCCACACTGCACCCACCCATGCAAGCATCTA CATCAGCCCTGAGGCGTGGACCTCCACCTCCTGCATCTAGGAAGAAGCCCCAGCCATCCTTGCAGTACCCTTCTACAGGTATGCCTGAAACTGGAAGGGG CCAAGTTGCTAATAGAGCTTCATCGGGTCAGTTTGCAGCCCATGAGGCTGCTGCACCTGCCACTTTCGATCCATTGATTGGAAGAAAAGTTTGGACTCGA TGGCCGGAAGATAATAACTTCTACGAGGCTCTCATAACAGACTACAAGGCAGACGAAGGAAGACATGCTTTGGTTTACGATATGAACACACGGGAGGAAA CATGGGAATGGGTCGATCTGAAAGAGATACCTGCAGAAGACATCAAATGGGAAGGTGACGATCCTACCCATTTCAGTAAAAGTGGCCGGCCTGGACCCGG TCCCGGTCGGGGCAATAAGAAGCCCTTGATGCGTGGTGGCTCCGCTGCTGCTGGGGCTGGACGTGGAAGAGGGAACACAAAGGGTCCAAAGAGGGATTTC CCTCTATCACAGAACGGCACTGGCAAAAAAACCTTAGGTGACATTGAGATCCTTCACACGGAGACTCTAATTAAGGAGGTGGAGAAAGTTTTTGGTGCTA GCCTTCCTGACCCAATGGAAATCGAGAAAGCAAAGAAAGTGCTCAAAGAACATGAACAAGCTCTCATCGATGCAATTTCAAGGCTGGAAGATGCTTCAGA TGGTATGAGAGAGGGAGGCAGTTTTCCAGGGGGAGGTCAATGGATCAAGAACAAAGTTGGGGGAAAGAGATACAGTGAACTTGGTGGAGAAAGTAGAGGT CCAGATGGTCAGGGAGGATAG
AA sequence Show only first row Show all	>Lus10031799 pacid=23180792 polypeptide=Lus10031799 locus=Lus10031799.g ID=Lus10031799.BGIv1.0 annot-version=v1.0 MPRISDMEIQIHNIEQEAYRYVLRAFKAQSDAITWEKESLITELRKELRVSDEEHREHLSRVNNDDMIRRIREWRKTSGSQSGMPNNTQPGHDRAPSPSV SASRKKQKTSQSVASLSSMGAPSPTLHPPMQASTSALRRGPPPPASRKKPQPSLQYPSTGMPETGRGQVANRASSGQFAAHEAAAPATFDPLIGRKVWTR WPEDNNFYEALITDYKADEGRHALVYDMNTREETWEWVDLKEIPAEDIKWEGDDPTHFSKSGRPGPGPGRGNKKPLMRGGSAAAGAGRGRGNTKGPKRDF PLSQNGTGKKTLGDIEILHTETLIKEVEKVFGASLPDPMEIEKAKKVLKEHEQALIDAISRLEDASDGMREGGSFPGGGQWIKNKVGGKRYSELGGESRG PDGQGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031799 [exp]	0	1
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031223 [exp]	1.0	0.8995
AT3G13670			Protein kinase family protein ...		Lus10042455 [exp]	3.0	0.8518
AT5G18420			unknown protein		Lus10027578 [exp]	3.3	0.8168
AT5G42700	B3		AP2/B3-like transcriptional fa...		Lus10019873 [exp]	4.2	0.8319
AT3G04670	WRKY	ATWRKY39, WRKY3...	WRKY DNA-binding protein 39 (....		Lus10014745 [exp]	4.5	0.8515
AT3G48710			DEK domain-containing chromati...		Lus10025759 [exp]	5.8	0.8797
AT1G79020			Enhancer of polycomb-like tran...		Lus10033318 [exp]	9.2	0.8105
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Lus10021934 [exp]	9.5	0.8298
AT4G36650		ATPBRP	plant-specific TFIIB-related p...		Lus10024022 [exp]	12.0	0.8101
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Lus10042404 [exp]	13.3	0.7965

Compare expression of checked genes

Lus10031799 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.