Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13030 926 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031224 [exp] 1217 / 0 AT5G13030 967 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G013900 [exp] 994 / 0 AT5G13030 989 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02696 [flax] [poplar] UPF0061 Uncharacterized ACR, YdiU/UPF0061 family
Representative CDS sequence Show only first row Show all	>Lus10031800 pacid=23180731 polypeptide=Lus10031800 locus=Lus10031800.g ID=Lus10031800.BGIv1.0 annot-version=v1.0 ATGCTGCTGCTTTCTCATTTATCTCCGAAGTCCCAACTCCGTTCTCTCCCCCGCCCCAAATTCCCATTCTACCCTCTCTCTTCTCCGAAATCCCAACTCT ATCCTCCCCCGCCTCGCTCACCCTTCGCATGCCACGTTAGCTCCTCCTCCTTCATGGACTCAACAGCCGCGCCGTTGTCCGTCGACTCCGTGACGGACGA TCTCAAGAACCAGAGCTTACAAGGGAAGGATTGTCGGACAGAGAGTAATACTACTGTTAAGTTGAAGCTCGAAGATCTGAATTGGGACCACTCGTTCGTC AATGAATTGCCCGGCGATCCGAGGACCGATCGACTTCCTCGTCAGGTTTTGCACGCTTGCTACACGAAAGTTAGCCCTTCAGCGGAAGTGGAAAATCCGC AACTCGTTGCGTGGTCCGACTCAGTTGCGCGGCTGCTTGATTTGGACTTTGAAGAATTTGAAAGGCCAGATTTCCCTCGTTTTCTTTCAGGGGCATCTCC TTTGGTTGGATCGGTACCCTTTGCTCAGAACTATGGGGGGCATCAGTTTGGAACCTGGGCAGGCCAGTTAGGTGACGGTCGGGCAATATCTCTAGGGGAG ATTCTGAATTCCAGAGGTGAACGATGGGAATTGCAGCTGAAGGGTGCCGGAAAGACTCCGTACAGCCGCTTTGCCGATGGCCTTGCAGTGTTGCGCAGTA GCGTCCGGGAGTTCCTTTGTAGTGAAGCAATGCACCACTTGGGTATCCCAAGTACTCGTGCACTTTCTCTTGTGACAACTGGGAAATTGGTTACTAGGGA TATGTTTTACGATGGAAATGCGAAGGAGGAACCTGGGGCGATCGTTTGTAGAGTAGCTCCATCATTTCTTCGCTTTGGTTCATATCAACTGCATGCTTCT AGAGGGAAAGAGGATCTCGAAATTGTTCGGGCCTTGGCGGACTATGCTATAAAGCATCATTTCCCTCACATTGAGAATATGGATAGAAGTGAGACCCTGT CCTTTACTACAGGAGAAGATGAAGATTCCGTCGTGGATCTTACCTCAAATAAATATGCAGCATGGATGGTGGAGATAGCGGAACGTACTGCTTATGTGGC TTCCAGATGGCAAGGGGTCGGTTTTACTCACGGAGTTCTAAACACCGACAATATGAGCATACTCGGTCTCACAATCGATTATGGTCCCTTTGGATTCTTG GATGCTTTTGATCCAAGTTTCACTCCTAATACAACTGATTTACCTGGGAGAAGGTACTGTTTCGCTAATCAACCTGATATTGGCCTATGGAACATTGCTC AGTTCGGAGCGACTCTAACTGCTGCTGGTTTGGTTAGTGATAAGGAGGCAAATTATGCCATGGAAAGGTATGGCACCAAGTTCATGGACGAGTATCAATG TATAATGACGAAAAAACTTGGCCTCCCTAAATACAACAAGCAGTTGCTAGGTAAACTCCTGAATAACATGGCTGTGGATAAAGTCGATTACACCAATTTT TTCCGTACGCTTTCAAACATCAAGGCGGATCCGAATATCCCGGAAGACGAACTATTAGTTCCGCTGAAAGCCGTCCTTTTGGATATCGGCAAGGAGCGTA AAGAGGCATGGACTACCTGGGTTCAGACCTACATACAAGAGCTTGCTGCTAGTGGAACCCCAGACGAGGAGAGGAAGCCCCAGATGGATTCCGTAAATCC GAAATACATCCTCCGCAACTACTTATGCCAGATGGCGATCGATGCAGCCGAAGGTGGGGACTTCTCGGAGGTAAGAAGGCTGCTGAAGTTAGTAGAGCGG CCGTACGACGAGCAGCCTGGCATGGAGAAGTATGCTCGGTTGCCACCGGCTTGGGCTTATCGGCCAGGCGTCTGTATGCTGTCCTGCTCTTCTTGA
AA sequence Show only first row Show all	>Lus10031800 pacid=23180731 polypeptide=Lus10031800 locus=Lus10031800.g ID=Lus10031800.BGIv1.0 annot-version=v1.0 MLLLSHLSPKSQLRSLPRPKFPFYPLSSPKSQLYPPPPRSPFACHVSSSSFMDSTAAPLSVDSVTDDLKNQSLQGKDCRTESNTTVKLKLEDLNWDHSFV NELPGDPRTDRLPRQVLHACYTKVSPSAEVENPQLVAWSDSVARLLDLDFEEFERPDFPRFLSGASPLVGSVPFAQNYGGHQFGTWAGQLGDGRAISLGE ILNSRGERWELQLKGAGKTPYSRFADGLAVLRSSVREFLCSEAMHHLGIPSTRALSLVTTGKLVTRDMFYDGNAKEEPGAIVCRVAPSFLRFGSYQLHAS RGKEDLEIVRALADYAIKHHFPHIENMDRSETLSFTTGEDEDSVVDLTSNKYAAWMVEIAERTAYVASRWQGVGFTHGVLNTDNMSILGLTIDYGPFGFL DAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFGATLTAAGLVSDKEANYAMERYGTKFMDEYQCIMTKKLGLPKYNKQLLGKLLNNMAVDKVDYTNF FRTLSNIKADPNIPEDELLVPLKAVLLDIGKERKEAWTTWVQTYIQELAASGTPDEERKPQMDSVNPKYILRNYLCQMAIDAAEGGDFSEVRRLLKLVER PYDEQPGMEKYARLPPAWAYRPGVCMLSCSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13030			unknown protein		Lus10031800 [exp]	0	1
AT3G27030			unknown protein		Lus10032030 [exp]	17.5	0.7034
AT1G69550			disease resistance protein (TI...		Lus10000945 [exp]	18.5	0.6815
AT3G59910			Ankyrin repeat family protein ...		Lus10005306 [exp]	19.5	0.6388
AT5G52510	GRAS	SCL8	SCARECROW-like 8 (.1)		Lus10039265 [exp]	22.3	0.7006
AT4G29270			HAD superfamily, subfamily III...		Lus10043042 [exp]	28.1	0.6562
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10029216 [exp]	33.8	0.6954
AT2G17030			F-box family protein with a do...		Lus10025100 [exp]	36.3	0.6452
AT4G00755			F-box family protein (.1.2)		Lus10038879 [exp]	36.7	0.5959
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Lus10025484 [exp]	42.5	0.5811
AT2G44520		COX10	cytochrome c oxidase 10 (.1)		Lus10019514 [exp]	46.9	0.6217

Compare expression of checked genes

Lus10031800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.