Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04640 354 / 4e-125 LIP2 lipoyltransferase 2 (.1.2) AT4G31050 140 / 2e-40 Biotin/lipoate A/B protein ligase family (.1) AT1G47578 135 / 1e-38 Biotin/lipoate A/B protein ligase family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031225 [exp] 454 / 1e-164 AT1G04640 358 / 1e-126 lipoyltransferase 2 (.1.2) Lus10025664 [exp] 134 / 7e-38 AT4G31050 346 / 8e-120 Biotin/lipoate A/B protein ligase family (.1) Lus10008181 [exp] 55 / 4e-09 AT4G31050 107 / 1e-28 Biotin/lipoate A/B protein ligase family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G014000 [exp] 367 / 4e-130 AT1G04640 388 / 2e-138 lipoyltransferase 2 (.1.2) Potri.002G131000 [exp] 127 / 1e-35 AT1G47578 360 / 6e-126 Biotin/lipoate A/B protein ligase family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [flax] [poplar] tRNA_synt_II PF03099 [flax] [poplar] BPL_LplA_LipB Biotin/lipoate A/B protein ligase family
Representative CDS sequence Show only first row Show all	>Lus10031801 pacid=23180800 polypeptide=Lus10031801 locus=Lus10031801.g ID=Lus10031801.BGIv1.0 annot-version=v1.0 ATGAGGTTGCCGCGGAGTCTGCATGTCTGGAAGATGGGAACAGTCAACTACTTGGAATCACTGAAGCTGCAGGAGAAGTTGGTATCCGAAAGGAAAGCAC ACAAGATATCCGACACACTTCTCTGCGTGCAGCATCCTCCAACGTACACTGTAGGGAAGCGAAGAACGGATCACAATCTGCTCATTTCCGAATCTGAGCT AGCAAGCTTAGGAGCTCAGCTTCAGTACACTGAAAGAGGTGGAGACATAACGTACCATGGCCCTGGTCAGGCAGTTCTGTACCCGATCGTTTCCCTCCGC GAGATCGGACTCGGGGCTAGGAAGTACGTAGAGAAGCTTGAGCTGACCATGATCGAGCTGGCATCACTCTACGGAGTGAAGGCATCTGCGGGCGGCCAAC AAGGGGAGACTGGAGTCTGGGTTGGAGCCGGCAAAATTGGCGCGATTGGAGTCCGTATCTCGAGCGGAATTACTTCTCACGGACTGGCGTTCAATATTGA CCCGGATTTGAGTTACTTCAGCCACATTGTGCCGTGTGGGATTGCGGATAAGCGAGTTACTTCTCTGAGGAAGGAGCTAGGTATTGTGCTTCCTACTGAA GAAGTTGTTCATGATCAGTTGGTTTCGTGTTTTGCTGGACTTTTTGGTTTTAGCAATCTTATCTGGGAGGAAAATGCTTCGTGTTCAAAGACCAAAGATT TGTGA
AA sequence Show only first row Show all	>Lus10031801 pacid=23180800 polypeptide=Lus10031801 locus=Lus10031801.g ID=Lus10031801.BGIv1.0 annot-version=v1.0 MRLPRSLHVWKMGTVNYLESLKLQEKLVSERKAHKISDTLLCVQHPPTYTVGKRRTDHNLLISESELASLGAQLQYTERGGDITYHGPGQAVLYPIVSLR EIGLGARKYVEKLELTMIELASLYGVKASAGGQQGETGVWVGAGKIGAIGVRISSGITSHGLAFNIDPDLSYFSHIVPCGIADKRVTSLRKELGIVLPTE EVVHDQLVSCFAGLFGFSNLIWEENASCSKTKDL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04640		LIP2	lipoyltransferase 2 (.1.2)		Lus10031801 [exp]	0	1
AT5G14600			S-adenosyl-L-methionine-depend...		Lus10032134 [exp]	4.1	0.7230
AT3G01820			P-loop containing nucleoside t...		Lus10032057 [exp]	10.8	0.6464
AT5G09450			Tetratricopeptide repeat (TPR)...		Lus10034221 [exp]	17.8	0.6371
AT3G60910			S-adenosyl-L-methionine-depend...		Lus10016376 [exp]	24.5	0.6052
AT5G45390		NCLPP3, NCLPP4,...	NUCLEAR-ENCODED CLP PROTEASE P...		Lus10012156 [exp]	39.2	0.6307
AT3G24030			hydroxyethylthiazole kinase fa...		Lus10023688 [exp]	42.7	0.6189
AT5G12100			pentatricopeptide (PPR) repeat...		Lus10014365 [exp]	56.2	0.6108
AT5G14080			Tetratricopeptide repeat (TPR)...		Lus10012551 [exp]	70.3	0.5750
AT5G20720		CHCPN10, ATCPN2...	CHLOROPLAST CHAPERONIN 10, cha...		Lus10021244 [exp]	130.7	0.5688
AT5G46850			unknown protein		Lus10040093 [exp]	231.0	0.5141

Compare expression of checked genes

Lus10031801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.