Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06310 226 / 5e-69 ATPOT1B, ATPOT1 protection of telomeres 1b, Nucleic acid-binding, OB-fold-like protein (.1) AT2G05210 188 / 3e-54 ATPOT1A Protection of Telomeres 1a, Nucleic acid-binding, OB-fold-like protein (.1.2.3) AT2G04395 57 / 1e-09 Nucleic acid-binding, OB-fold-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030151 [exp] 95 / 8e-24 ND / Lus10030152 [exp] 79 / 3e-18 ND 37 / 3e-04 Lus10031227 [exp] 46 / 3e-05 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G046400 [exp] 327 / 2e-107 AT5G06310 330 / 2e-108 protection of telomeres 1b, Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF02765 [flax] [poplar] POT1 Telomeric single stranded DNA binding POT1/CDC13
Representative CDS sequence Show only first row Show all	>Lus10031803 pacid=23180712 polypeptide=Lus10031803 locus=Lus10031803.g ID=Lus10031803.BGIv1.0 annot-version=v1.0 ATGGAGGGGATAAACTCCATAGTCGACGCCAGAGCTCGCACTCATCAGAAGGTCACCTTCTTCGGCGTCGTCGTCGAGTTGACGCTCCCCCGTCCCTCCA AAGGCTCCGATTGTTATTGCACACTGAAAGTAGTCGATGAGACGTATCAAGAAGGTTTTGTGGTCAATGTGTTTGCAAGGTCTGCTCATGAGCTTCCTCT GGTTGCAGCACTCGGCGATATTGTCCAGTTCCGTCGTGTTATGGTGAAAGAACACGTTGGGGAAATAAATGCAGTATTCTACAAAGATAGTTCATCTTTT GCTCTGTATCAAAGGCAGCAGCATGCCCAAGGTTTCAATCCTTATCAGTCTTCTGAGAATTTTCGTTGCCCAGGGCCACGAGATTCGGAATCTATAGCAA GGTTGACGACATGGTTTGTAAACTTTGCGCCCGATGAAGGGTTGCCAACTACCTTATCAGCCTTGACCGGGATCACCGAACAAGCTCACCTCTGTTTCAA GGTACTCTGTGTGCACGAGTATATACAGGGTAAGTGGGTGGCCCTTGTTTGGGACGGAACTGATTGTCCATCCAACGCAGTTGAACCAATGCTGGAAGAT GAAAGCGACAATCCAATGCCTCTAACCATAGAACCAGTGCCTTTACCAATCGATCTGCTCCGTACATTTCCTACCATTGGAACGATATTAAGGGTCATGA TTGAAGACGACTCAAAGACACCTGCTATCCGCTTACTCAATCCCGGGAATTGGGTGAAGCTATACAACATGACTATTAAAGTCCAGGCAGGATTATGGTA TGGGTCGTTAACACCGTTCGTAAAGTTACATTATACATCAGGCAACAACCCTTTTGTGTTGGAACGTGAAAGGTTTCATCAAGATCGATTGTCGGAGATG CAATGTGTGCCATCTTCATCTATTATTGGTTCTTCACGGATGACAGAAATCAATAATGACAATGCTCGTACTGGTACATTGATGGACGTCATCACTAGTT CTGAGATGACCGCAAAATTCAAGTGTGTAGCTCGAGTGATCGCTATGAAACCATGGCATTTGAAGGATATCGTGTGTCCTCTGCTCCTCAGGCTGACTCT AGAGGATCCAACTGCTAGAATCCATGCCATCGTGGACAAATTAGATGGGAGGAAGTTTTTCTGGGAACATCCATCGCCAGAGCCATTGGCATGGAAGCTA GAGAGACTCCTTGGCGTAACCACAGAAGAGGACGGGTCGAGAATAGAATCACCACGAGATGCACCCTGGATAGACGTGTGCCTCGAGTGGTATTACCGTG ACGGAACGAAAGAGTACCGGATCTTCGACACCAAGATGTTGGTGTAA
AA sequence Show only first row Show all	>Lus10031803 pacid=23180712 polypeptide=Lus10031803 locus=Lus10031803.g ID=Lus10031803.BGIv1.0 annot-version=v1.0 MEGINSIVDARARTHQKVTFFGVVVELTLPRPSKGSDCYCTLKVVDETYQEGFVVNVFARSAHELPLVAALGDIVQFRRVMVKEHVGEINAVFYKDSSSF ALYQRQQHAQGFNPYQSSENFRCPGPRDSESIARLTTWFVNFAPDEGLPTTLSALTGITEQAHLCFKVLCVHEYIQGKWVALVWDGTDCPSNAVEPMLED ESDNPMPLTIEPVPLPIDLLRTFPTIGTILRVMIEDDSKTPAIRLLNPGNWVKLYNMTIKVQAGLWYGSLTPFVKLHYTSGNNPFVLERERFHQDRLSEM QCVPSSSIIGSSRMTEINNDNARTGTLMDVITSSEMTAKFKCVARVIAMKPWHLKDIVCPLLLRLTLEDPTARIHAIVDKLDGRKFFWEHPSPEPLAWKL ERLLGVTTEEDGSRIESPRDAPWIDVCLEWYYRDGTKEYRIFDTKMLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06310		ATPOT1B, ATPOT1	protection of telomeres 1b, Nu...		Lus10031803 [exp]	0	1
AT3G06960		TGD4, PDE320	TRIGALACTOSYLDIACYLGLYCEROL 4,...		Lus10022978 [exp]	10.6	0.6741
AT1G19485			Transducin/WD40 repeat-like su...		Lus10018573 [exp]	17.0	0.6852
AT5G40770		ATPHB3	prohibitin 3 (.1)		Lus10027776 [exp]	21.4	0.5533
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Lus10007172 [exp]	49.6	0.6216
AT3G09150		ATHY2, GUN3, HY...	GENOMES UNCOUPLED 3, ARABIDOPS...		Lus10022422 [exp]	51.0	0.5875
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Lus10018962 [exp]	52.8	0.6327
AT2G27350		OTLD1	otubain-like deubiquitinase 1,...		Lus10013303 [exp]	53.5	0.5628
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10043335 [exp]	79.1	0.6256
AT2G06090			Plant self-incompatibility pro...		Lus10016350 [exp]	89.0	0.6144
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10026557 [exp]	102.7	0.5722

Compare expression of checked genes

Lus10031803 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.