Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60900 217 / 4e-65 RLK1 receptor-like protein kinase 1 (.1) AT4G32300 156 / 1e-42 SD2-5 S-domain-2 5 (.1) AT1G34300 144 / 1e-38 lectin protein kinase family protein (.1) AT5G24080 142 / 1e-38 Protein kinase superfamily protein (.1) AT4G00340 136 / 8e-36 RLK4 receptor-like protein kinase 4 (.1) AT5G35370 134 / 6e-35 S-locus lectin protein kinase family protein (.1) AT2G19130 128 / 5e-33 S-locus lectin protein kinase family protein (.1) AT1G60800 123 / 3e-31 NIK3 NSP-interacting kinase 3 (.1) AT5G45780 122 / 4e-31 Leucine-rich repeat protein kinase family protein (.1) AT1G16670 118 / 1e-30 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031230 [exp] 332 / 1e-107 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10030400 [exp] 206 / 1e-62 AT5G60900 356 / 1e-115 receptor-like protein kinase 1 (.1) Lus10024195 [exp] 201 / 1e-58 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10004365 [exp] 194 / 6e-56 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1) Lus10018251 [exp] 175 / 4e-54 AT5G60900 213 / 2e-65 receptor-like protein kinase 1 (.1) Lus10031805 [exp] 186 / 3e-53 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1) Lus10031231 [exp] 186 / 4e-53 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1) Lus10032438 [exp] 164 / 3e-48 AT5G60900 285 / 2e-90 receptor-like protein kinase 1 (.1) Lus10042940 [exp] 167 / 2e-46 AT5G60900 381 / 1e-120 receptor-like protein kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T084351 [exp] 229 / 8e-73 AT5G60900 419 / 4e-141 receptor-like protein kinase 1 (.1) Potri.T084500 [exp] 234 / 6e-71 AT5G60900 653 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211932 [exp] 228 / 7e-71 AT5G60900 510 / 7e-175 receptor-like protein kinase 1 (.1) Potri.T084200 [exp] 229 / 5e-70 AT5G60900 573 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G212000 [exp] 230 / 2e-69 AT5G60900 655 / 0.0 receptor-like protein kinase 1 (.1) Potri.001G014100 [exp] 226 / 8e-68 AT5G60900 669 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084300 [exp] 225 / 1e-67 AT5G60900 645 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084401 [exp] 225 / 1e-67 AT5G60900 641 / 0.0 receptor-like protein kinase 1 (.1) Potri.001G153800 [exp] 220 / 9e-66 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1) Potri.001G014600 [exp] 218 / 4e-65 AT5G60900 666 / 0.0 receptor-like protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10031804 pacid=23180777 polypeptide=Lus10031804 locus=Lus10031804.g ID=Lus10031804.BGIv1.0 annot-version=v1.0 ATGGCTCTCCCCCTCTGGCGATTTCGCTTCGGATTTCCCCCCCTCGCCGGAAACAACACCTTCTTCCTCCTCTGCATCTACTACGCCAGAATCCCCGACC GGACAATCGTCTGGTACGCCAACGGCGACTCTCCTGCTCTTGTAGCTGTCAAGAAGCTGAACTCTTTCGGACAGGACAGTGCTGGGAAGGAATTCAAGAA CGAGGTTAGCGTAATCGGCGACCCATCACAGGAACCTGGTTCGACTCGTCGGGTACTGCGAGGAAGGGAAAGACCGGCAGCTGCTGGTTTACGAGTTCCT CAGCAACGGGACGTTGGCGGACTACCTGTTTGGGGAGGTGAAGCCGAGTTGGGGGAAGAGGATTCAGATTGCGTTAGAAATCGCGAGGGGGATTCTGTAA TCCACTGCGACATCAAGCCGCAAAACATACTCCTCGACGACCACTACACCGCGAGGATCTCTGATTTCGGGCTGGCGAAGCTCCTGGTGTTGAACCAAAC CCAGACCCAGACTGCCATTCGGGGGACCAAGGGTTACGTGGCGCCCGAATGGTTTAGGAACACCCCCGTTACGACGAAAGTTGATGTTTACAGCTTTGGG GTGTTGCTTCTGGAGATCATTAGCTGCAGGAAAAGCGTGGATGCCAACGAGAGCCCCACCGACAGGGCGATCCTGACCTACTGGGGTTACGATCGCTACT GCGAGGGAGCCTTTGGCGATCTGGTCGACTACGATATGGAGGCGATGAACGACGCGGATAAGCTGGAGAAGTATGTGAAGATTGCCACATGGTGCATTCA GGAAGATCCCAATGTAAGGCCTACGATGAAGCAGATGCTCGAAGGTGTGACCGAGGTTCCGAATCCTCCGTGTCCGACCCCTTACACCGTGACGGTTACG AAGGATGCTTGA
AA sequence Show only first row Show all	>Lus10031804 pacid=23180777 polypeptide=Lus10031804 locus=Lus10031804.g ID=Lus10031804.BGIv1.0 annot-version=v1.0 MALPLWRFRFGFPPLAGNNTFFLLCIYYARIPDRTIVWYANGDSPALVAVKKLNSFGQDSAGKEFKNEVSVIGDPSQEPGSTRRVLRGRERPAAAGLRVP QQRDVGGLPVWGGEAELGEEDSDCVRNREGDSVIHCDIKPQNILLDDHYTARISDFGLAKLLVLNQTQTQTAIRGTKGYVAPEWFRNTPVTTKVDVYSFG VLLLEIISCRKSVDANESPTDRAILTYWGYDRYCEGAFGDLVDYDMEAMNDADKLEKYVKIATWCIQEDPNVRPTMKQMLEGVTEVPNPPCPTPYTVTVT KDA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10031804 [exp]	0	1
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10018915 [exp]	2.0	0.9374
AT1G07400			HSP20-like chaperones superfam...		Lus10021109 [exp]	2.6	0.9395
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10038985 [exp]	2.8	0.9144
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10029945 [exp]	3.9	0.9193
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10017910 [exp]	4.9	0.9357
AT3G57120			Protein kinase superfamily pro...		Lus10011517 [exp]	6.9	0.8814
AT1G23850			unknown protein		Lus10030860 [exp]	7.3	0.9161
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10035312 [exp]	8.3	0.8814
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Lus10022636 [exp]	9.5	0.8979
AT3G23880			F-box and associated interacti...		Lus10008870 [exp]	9.9	0.8955

Compare expression of checked genes

Lus10031804 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.