Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60900 500 / 1e-166 RLK1 receptor-like protein kinase 1 (.1) AT1G34300 333 / 9e-102 lectin protein kinase family protein (.1) AT5G24080 259 / 8e-78 Protein kinase superfamily protein (.1) AT4G00340 256 / 1e-73 RLK4 receptor-like protein kinase 4 (.1) AT2G19130 254 / 9e-73 S-locus lectin protein kinase family protein (.1) AT4G32300 251 / 9e-72 SD2-5 S-domain-2 5 (.1) AT4G11900 244 / 4e-69 S-locus lectin protein kinase family protein (.1) AT5G35370 240 / 2e-67 S-locus lectin protein kinase family protein (.1) AT1G11280 239 / 3e-67 S-locus lectin protein kinase family protein (.1.2.3.4) AT1G61610 236 / 5e-66 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031231 [exp] 1505 / 0 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1) Lus10024195 [exp] 883 / 0 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10004365 [exp] 612 / 0 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1) Lus10031230 [exp] 608 / 0 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10010992 [exp] 566 / 0 AT5G60900 540 / 0.0 receptor-like protein kinase 1 (.1) Lus10042940 [exp] 476 / 3e-156 AT5G60900 381 / 1e-120 receptor-like protein kinase 1 (.1) Lus10036639 [exp] 465 / 8e-152 AT5G60900 394 / 1e-125 receptor-like protein kinase 1 (.1) Lus10030400 [exp] 432 / 5e-144 AT5G60900 356 / 1e-115 receptor-like protein kinase 1 (.1) Lus10029802 [exp] 336 / 5e-103 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T085000 [exp] 835 / 0 AT5G60900 559 / 0.0 receptor-like protein kinase 1 (.1) Potri.T085100 [exp] 826 / 0 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084900 [exp] 818 / 0 AT5G60900 548 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084701 [exp] 813 / 0 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211800 [exp] 813 / 0 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1) Potri.T085150 [exp] 810 / 0 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211366 [exp] 801 / 0 AT5G60900 568 / 0.0 receptor-like protein kinase 1 (.1) Potri.001G014700 [exp] 800 / 0 AT5G60900 575 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211700 [exp] 799 / 0 AT5G60900 527 / 5e-177 receptor-like protein kinase 1 (.1) Potri.T084601 [exp] 774 / 0 AT5G60900 519 / 3e-174 receptor-like protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10031805 pacid=23180576 polypeptide=Lus10031805 locus=Lus10031805.g ID=Lus10031805.BGIv1.0 annot-version=v1.0 ATGGCTAACTTCCCCTTCTCCGTACTCCTTCTATGGCTTCCATTACTCGCCATAGTCGACTCCCAGTCCGCCCCCGCCGGCTACCGCAACGTAACGTTAG GCTCTTCCCTCACCACCGCGTCCAACGACTACTGGCTCTCGCCGTCCGGCGACTTTGCGTTTGGATTCCAACGAGCTGCCGAGAACAGTGACGATGGTAA CGGATTTTTATTGGCCATTTGGTTCGACCGTATCCCACAGCGGACCGTGGTCTGGTCGGCCAACAGGAACAACTTGGTGCCTGATGGGTCGACGGTCAAA CTCACGAAAGATGGCAGCTTGATCCTGGCCGACCCGTCGAGCAAGCAGGTCTGGAATCCCAATGCGATTGGCATCTCTGGAGTTTCCTATGGTGCGTTGC TTGATACGGGGAATTTTGTACTGGCTGATCGAAACTCCGTCGATCTGTGGGGGAGTTTCGATCAGCCTACGGACACGATGTTACCTACTCAGACTCTGAA AAAAGGTGCACAACTAATATCCAAATATTCAAGCACAAACTACTCCACCGGAAGATTTAAGCTCAGTCTCCAGAGCGACGGCAACTTGGTTCTCTATACA GTCTTCTACCCACAATCAGGAAGCAACTACGCTTACTGGGCAACCGCCACCGGCGACGGAAACGCCGTCGTATTCAACCGGACAGGTTCCCTCTTCCTAA CCACCACCAACGGAACAATCCTCAACGCCCTGTTCAACAACCGAGAATCAACCAAAGATTTCCACCACCGCGTAACAATCGACCACGACGGAGTCTTCCG GCGATACATCCACCCGAAATCCACCTCCAATTCATCAAACTGGCCGATGGAATGGACGGCGTTAGATTCGGAGCCATCGAACATCTGCACGCAGATCTTT GGAACCACCGGCAGCGGAGCCTGCGGCTTCAATTCCTATTGCCAGATGGAAGACGGCCAGCTGCCGCAATGCAACTGCCCGCAGGGCTACACCTATCTGG ACTCTTCGGATCGGAGCAAAGGCTGCGTGAAGAACTTCGTCCCGCAGAACTGTCTCTTAAACGAGAACGAGAAATTCGACCTAGTGGAGATGATCAACGC CGATTTCCCTCAGGGAGATTACGGATTCTTGGGGTCGATCTCCGAGGACGCTTGCCGTGATTCTTGTTTGAGCGATTGCCTCTGTGACGCGGTGACTTTT AACGGCGGATCTTGCTGGACGAAGAGAGCTCCTCTGTCTAACGGAAATGTCGATACGAAGAACGGAGGGAAAACTCTTATCAAAGTTAGACGAGTGAATT CGACGACTGATCAAACTTCTGATCTTACGCAGGGGAGGAAAGATCGGTCGATGAATCTCATCGTTACTGCTGGATGGATTCTGTTAGGCGGATCGGTGTT TGTTAATCTCTTGTTTCTCTACGCCAGCTGTCCATGGCGGAAGAACAATCATCAACGTTTCATCAGGCCAGTTCGCGACGACGGCACAAATCTGATGAGC TTTGCGTATAGAGAGATGGAATTGGCTACCGGTGGATTCAAGCAGATCCTGGGGAGCGGATCGTCGGGGACGGTTTACAAAGGCGTTTTGAATCGAAGTA CGAATTCGGAACGGTTAGTTGCAGTCAAGGTGCTCGACAAAATGCCTAAAAGAAAAAATGGCCAGTATGATATTAGGGTGTTCGCAACCGAATTGAAGTT GATCAGCGGGACGAACCATAAAAGTTTGGTTAAACTGGTCGGGTTCTGCAACGAAGGCGATCACTGTCTGCTCGTGTATGAGTACATGAGCAACGGATCG TTGGCCGATTCCTTGTTTAATCAGCCAACGATCGACTGGTACACGAGGACTCATATAGCCTACTCGGTAGCGAGAGGACTCGTGTACCTACACGAGGAAT GCACCACACAGATAATCCACTGCGACATCAAGCCGCAGAACATCCTCCTCGACTCTACAATGACAGCCCGAATATCCGATTTCGGGCTTTCCAAGCTGAT GCAGCCCGACCAGACCAAGACAGTGACCGCTATCCGCGGCACGAAGGGGTATCTGGCGCCGGAATGGTTCCGTAACGTGGCGATAACGGCAAAAGTCGAC GTGCACAGCTTCGGGATCGTGCTGCTGGAGCTGGTGTGCTGCAGGAAGAACCGCATGATGGAGGTCGGCAATGAAGAGGAGATGGTGCTGGTGGATTGGG CTTACGAATGTTACAGTAAGGGGAAGCTTTACAAGCTCGTGGAGAAGGACGAGTCGGCAATGGCGGATATTGGGAGAGTTGAGAGGTTTGTGAAAGTTGC TATGTGGTGTATTCAGGAGGATCCATCGTTGAGACCTGGGATGAAGAAGGTTGCTCTTATGCTTGAAGGTGCTGTCGCTGTCTCCGAGCCGCCCGATCCA AACTCCTTCATCGGTGCCGTTTGA
AA sequence Show only first row Show all	>Lus10031805 pacid=23180576 polypeptide=Lus10031805 locus=Lus10031805.g ID=Lus10031805.BGIv1.0 annot-version=v1.0 MANFPFSVLLLWLPLLAIVDSQSAPAGYRNVTLGSSLTTASNDYWLSPSGDFAFGFQRAAENSDDGNGFLLAIWFDRIPQRTVVWSANRNNLVPDGSTVK LTKDGSLILADPSSKQVWNPNAIGISGVSYGALLDTGNFVLADRNSVDLWGSFDQPTDTMLPTQTLKKGAQLISKYSSTNYSTGRFKLSLQSDGNLVLYT VFYPQSGSNYAYWATATGDGNAVVFNRTGSLFLTTTNGTILNALFNNRESTKDFHHRVTIDHDGVFRRYIHPKSTSNSSNWPMEWTALDSEPSNICTQIF GTTGSGACGFNSYCQMEDGQLPQCNCPQGYTYLDSSDRSKGCVKNFVPQNCLLNENEKFDLVEMINADFPQGDYGFLGSISEDACRDSCLSDCLCDAVTF NGGSCWTKRAPLSNGNVDTKNGGKTLIKVRRVNSTTDQTSDLTQGRKDRSMNLIVTAGWILLGGSVFVNLLFLYASCPWRKNNHQRFIRPVRDDGTNLMS FAYREMELATGGFKQILGSGSSGTVYKGVLNRSTNSERLVAVKVLDKMPKRKNGQYDIRVFATELKLISGTNHKSLVKLVGFCNEGDHCLLVYEYMSNGS LADSLFNQPTIDWYTRTHIAYSVARGLVYLHEECTTQIIHCDIKPQNILLDSTMTARISDFGLSKLMQPDQTKTVTAIRGTKGYLAPEWFRNVAITAKVD VHSFGIVLLELVCCRKNRMMEVGNEEEMVLVDWAYECYSKGKLYKLVEKDESAMADIGRVERFVKVAMWCIQEDPSLRPGMKKVALMLEGAVAVSEPPDP NSFIGAV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10031805 [exp]	0	1
AT5G66500			Tetratricopeptide repeat (TPR)...		Lus10041770 [exp]	46.9	0.7187
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Lus10027573 [exp]	81.7	0.6946
AT1G21200	Trihelix		sequence-specific DNA binding ...		Lus10029777 [exp]	101.0	0.6741
AT1G69210			Uncharacterised protein family...		Lus10026674 [exp]	103.9	0.6786
AT4G33355			Bifunctional inhibitor/lipid-t...		Lus10023087 [exp]	105.8	0.6861
AT5G57500			Galactosyltransferase family p...		Lus10015527 [exp]	114.8	0.6557
AT1G49230			RING/U-box superfamily protein...		Lus10005816 [exp]	124.5	0.6750
AT3G55605			Mitochondrial glycoprotein fam...		Lus10001015 [exp]	132.2	0.6720
AT2G30160			Mitochondrial substrate carrie...		Lus10026395 [exp]	185.2	0.6315
AT2G30920		ATCOQ3, EMB3002	embryo defective 3002, coenzym...		Lus10033512 [exp]	200.5	0.6379

Compare expression of checked genes

Lus10031805 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.