Plant FIBer expression Database

Lus10031806 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G57930 76 / 1e-17 unknown protein
AT2G42190 54 / 2e-09 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031232
[exp]
127 / 1e-37 AT2G42190 88 / 5e-23 unknown protein
Lus10031233
[exp]
112 / 3e-32 AT3G57930 78 / 3e-19 unknown protein
Lus10031807
[exp]
98 / 2e-26 AT3G57930 86 / 2e-22 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.T085200
[exp]
126 / 1e-37 AT3G57930 109 / 1e-31 unknown protein
Potri.003G211200
[exp]
124 / 7e-37 AT3G57930 108 / 2e-31 unknown protein
Potri.001G015000
[exp]
122 / 7e-36 AT3G57930 108 / 4e-31 unknown protein
PFAM info
Representative CDS sequence
>Lus10031806 pacid=23180694 polypeptide=Lus10031806 locus=Lus10031806.g ID=Lus10031806.BGIv1.0 annot-version=v1.0
ATGAGTAATGTCTCTTTTGTCTGGCTTGTGCAGGGAGGTGTTTATCTGTATGAGCTTTCTTATTCTGTTTATATAGTAAGGATCAAAGCTATGAGGAGAG
GTAGAGGAAAGGGGGAAAAGTTGACTGTGAGCAATCATGACGATGGTGGAAGTGGAGAAGAAGAAGAACTGAAGATTCCTGCACAGAAGAGAAGAGGGAG
GCCACAGAAGCCCCTGAAGGATGACATCGACGACGAAGAAGTCAAGAAGATCGAAGACAATGAGGATGGTGTGCTTAAGAATGGGAAAGGTCCAACAGAG
AATGGCAAGAAGAGGAGACGGAACTCGCAGCAGGCGAAGGAGAAACCGGATTCGGTCAAGGAGGAAGCCACCAATGGTGTAGTAGTAATAGGAGGAGGAA
CAAAGTCTACTACTAATACTGACAACGACTCGACCAAGGCTATTAACGGGTTTAGGCAGAACGGAAGCAGGCGGAAGAGCAAGCCTCATCGTGCTGCTGA
GGCAGGCGTGGAGTGTAGGCGATCGGGGGTAATGATATAG
AA sequence
>Lus10031806 pacid=23180694 polypeptide=Lus10031806 locus=Lus10031806.g ID=Lus10031806.BGIv1.0 annot-version=v1.0
MSNVSFVWLVQGGVYLYELSYSVYIVRIKAMRRGRGKGEKLTVSNHDDGGSGEEEELKIPAQKRRGRPQKPLKDDIDDEEVKKIEDNEDGVLKNGKGPTE
NGKKRRRNSQQAKEKPDSVKEEATNGVVVIGGGTKSTTNTDNDSTKAINGFRQNGSRRKSKPHRAAEAGVECRRSGVMI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G57930 unknown protein Lus10031806
[exp]
0 1
AT3G09870 SAUR-like auxin-responsive pro... Lus10013819
[exp]
1.0 0.9399
AT5G48905 LCR12 low-molecular-weight cysteine-... Lus10021078
[exp]
3.2 0.9046
AT4G00165 Bifunctional inhibitor/lipid-t... Lus10015883
[exp]
3.5 0.9313
AT5G19875 unknown protein Lus10006311
[exp]
4.5 0.9123
AT4G00165 Bifunctional inhibitor/lipid-t... Lus10009282
[exp]
4.5 0.9150
AT5G25620 YUC6 YUCCA6, Flavin-binding monooxy... Lus10041729
[exp]
4.6 0.9176
AT5G66130 ATRAD17 RADIATION SENSITIVE 17 (.1) Lus10041883
[exp]
5.6 0.8724
AT1G45110 Tetrapyrrole (Corrin/Porphyrin... Lus10024288
[exp]
6.2 0.8637
AT2G40435 unknown protein Lus10017415
[exp]
7.5 0.8969
AT3G03990 alpha/beta-Hydrolases superfam... Lus10017296
[exp]
7.6 0.8743

Lus10031806 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.