Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45140 753 / 0 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) AT1G67560 570 / 0 ATLOX6, LOX6 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G17420 563 / 0 ATLOX3, LOX3 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) AT1G72520 559 / 0 ATLOX4, LOX4 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G55020 505 / 2e-168 ATLOX1, LOX1 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) AT3G22400 467 / 3e-153 ATLOX5, LOX5 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031236 [exp] 1403 / 0 AT3G45140 805 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10032087 [exp] 1004 / 0 AT3G45140 894 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10039094 [exp] 920 / 0 AT3G45140 946 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10031810 [exp] 901 / 0 AT3G45140 959 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10002547 [exp] 852 / 0 AT3G45140 971 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10041646 [exp] 815 / 0 AT3G45140 939 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10035232 [exp] 793 / 0 AT3G45140 584 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10002545 [exp] 788 / 0 AT3G45140 991 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10027379 [exp] 749 / 0 AT1G72520 867 / 0.0 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G015400 [exp] 833 / 0 AT3G45140 990 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015500 [exp] 827 / 0 AT3G45140 975 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.017G046200 [exp] 823 / 0 AT3G45140 979 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015300 [exp] 790 / 0 AT3G45140 943 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.009G022400 [exp] 788 / 0 AT3G45140 1008 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.010G057100 [exp] 606 / 0 AT1G67560 1144 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.001G167700 [exp] 601 / 0 AT1G17420 1444 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Potri.008G178000 [exp] 598 / 0 AT1G67560 1155 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.003G067600 [exp] 565 / 0 AT1G17420 1000 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Potri.005G032600 [exp] 489 / 4e-162 AT1G55020 1284 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00305 [flax] [poplar] Lipoxygenase Lipoxygenase CL0321 [flax] [poplar] PLAT PF01477 [flax] [poplar] PLAT PLAT/LH2 domain
Representative CDS sequence Show only first row Show all	>Lus10031809 pacid=23180667 polypeptide=Lus10031809 locus=Lus10031809.g ID=Lus10031809.BGIv1.0 annot-version=v1.0 ATGGGGATGGAAGACATCTCTAGCTTCTTCGGTAAAACCTTCCAGCTCCAGGTCGTTAGTGCCCAGTTCGATCCTGAGACGGGATTAGAGCGACCGAGGG TGAATGGACACGCGAAGAAAGTAAGCGAGCAAGGTGGGGAGATTAAGTACGAGGCGGAGTTCAAAATTCCTGACGATTTCGAAGAAATCGATGCGGTTGT GGTGGTGAACGAGCACTCTGGTGAGATGTTCCTCAAGGATATTGTGCTTCATGGCTTCACCCTTGAACCCATTAATGTTCCTTGCGACTCTTGGGTCCAT CCCAAGTCTCAGAACTCAAACAAGAGGATCTTCTTTACCACTAAATCGGAGACAAGGAGCGGCGGAGAATTCTACGTCCCGCGAGACGAGGAATTCTCGG AGGTGAAGGACCAATGCTTCAATCGGAATACCTTATCGTCAGTGCTCCGTGCGGTGGTGCTCGCGATGGAGACGGTTTTGATTGATCCCGATCTAGGATT TCCTCACTTCGCCGCCATTGATAACCTGTTCGATCAAGGACTCGATCTGCCACCCCGCGCAGCAGATGCTCCCTGGACGGATATCCTCCCTAGGCTGATC AGGACCGCCGCTGAACGATCCAATGACATGTTGCAGTTTGAGCTCCCTACCACCATGGAGATTAAAGAACGAAGATCACAGTGGAAAAGTGGAAATGAAT GTTTGCAGGAATGGCCATTGAAGAGTAAGCTTGATCCAGAGGTCTATGGTCCACCAGAATCTGCAATTACCACTGCAGTTGTTGAAAGGCAAATTAGAGG TTTCTCGACAGTTGAGGAGGCTATAGAGAAGAAGAAGCTATTCGTCCTGGATTACCATGATTTGTTCTTGCCATTTGTGAGCACTGTAAGGGAGCAAGGA GGAACTGTACTATACGGGTCGAGGGCATTGTTCTTTCTGACCCCTATTGGCACGTTGAAACCGGTTGCGATCGAGCTCACCAGACCACCAATGGACGGCA AGCCACAGTGGAAACAAGTCTACACGCCGACGCTGTGTTCTTCCACCGATCAGTGGCTCTGGAAGCTGGCCAAAACCCACGTCCTTGCCAATGACGTTGG ATATCATCAACTAGTAAGCCATTGGCTGAGAACGCATTGCTGCACAGAACCTTACATAATCGCAACGAATCGTCAACTTAGTGCCATGCACCCAATCTAT AGACTCTTGCTACCTCACTTCCGTTATACGATGGAGATCAATGCTTTAGCTCGCCAAGCTCTGATCAATGCAGGTGGCATCATTGAAACTTGTTTTGCTC CTCTCAAGTATGCCATCCAGCTCAGTTCCGCAATCTACGGCCAAAACTGGCGATTCGACTGCGAAGCACTTCCAAAGGACCTAATCAGGAGGGGGATGGC CTTTGAAGATCCTTCAGCCCCGCACGGCCTGAAACTAACAATCGAGGACTACCCCTACGCGAGCGACGGGCTAATCATGTGGGACGCATTGGAGCAATGG GTTACCGACTACGTAGACCGATACTATCCAGACGCAGCCCTCGTGGATGCTGAGCTTCAAGCCTGGTGGATCGAGATTCGCACGGTCAGCAATCAGGACA AGAAAGACGAGCCCTGGTGGCCAAAGCTGAACACCCCGCGGGACCTCGTGGGGATCCTCACGACTATAATGTGGGTCACGTCAGGCCACCACGCTGCAGT GAACTTCGGACAGTACACGTTCGGAGGCTACCTCCCGAACAGGCCGACGATCGGGAGGAAGAAGATGCCAGACGAGGACGGAACCGACGAAGAGTGGAAG CGGTTCCTCGAAAAACCCGAAGCGGTGATCCTCGATATGTACCCGTCGCAGCTGCAGGCGTCGAAGGTGATGGCCGTTCTGGACGTTTTATCGGGGCACT CGATCGAGGAAGAGTACATGGGGAAGGAGATGGAGCAGGCGTGGGCTGACGACCCGGTGGTCAAATCGGCTTTCGAAAAGTTCAGCGGGAGGATGATGGA GCTGGAAGGCAAGATCGATGCTCGAAATGCAAATCCGAAGCTGAAGAACAGAAATGGTGCTGGTGTTCTTCCTTACGAGCTTCTGAAGCCGTTTTCTGAG CCTGGTGTCACTGGGAAAGGTGTTCCTTACAGTATCTCTATCTAG
AA sequence Show only first row Show all	>Lus10031809 pacid=23180667 polypeptide=Lus10031809 locus=Lus10031809.g ID=Lus10031809.BGIv1.0 annot-version=v1.0 MGMEDISSFFGKTFQLQVVSAQFDPETGLERPRVNGHAKKVSEQGGEIKYEAEFKIPDDFEEIDAVVVVNEHSGEMFLKDIVLHGFTLEPINVPCDSWVH PKSQNSNKRIFFTTKSETRSGGEFYVPRDEEFSEVKDQCFNRNTLSSVLRAVVLAMETVLIDPDLGFPHFAAIDNLFDQGLDLPPRAADAPWTDILPRLI RTAAERSNDMLQFELPTTMEIKERRSQWKSGNECLQEWPLKSKLDPEVYGPPESAITTAVVERQIRGFSTVEEAIEKKKLFVLDYHDLFLPFVSTVREQG GTVLYGSRALFFLTPIGTLKPVAIELTRPPMDGKPQWKQVYTPTLCSSTDQWLWKLAKTHVLANDVGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPIY RLLLPHFRYTMEINALARQALINAGGIIETCFAPLKYAIQLSSAIYGQNWRFDCEALPKDLIRRGMAFEDPSAPHGLKLTIEDYPYASDGLIMWDALEQW VTDYVDRYYPDAALVDAELQAWWIEIRTVSNQDKKDEPWWPKLNTPRDLVGILTTIMWVTSGHHAAVNFGQYTFGGYLPNRPTIGRKKMPDEDGTDEEWK RFLEKPEAVILDMYPSQLQASKVMAVLDVLSGHSIEEEYMGKEMEQAWADDPVVKSAFEKFSGRMMELEGKIDARNANPKLKNRNGAGVLPYELLKPFSE PGVTGKGVPYSISI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10031809 [exp]	0	1
AT5G24890			unknown protein		Lus10009793 [exp]	14.4	0.8975
AT3G50120			Plant protein of unknown funct...		Lus10004515 [exp]	79.9	0.8756
AT2G14095			unknown protein		Lus10025500 [exp]	85.2	0.8751
AT5G45690			Protein of unknown function (D...		Lus10005416 [exp]	92.2	0.8718
AT2G27970		CKS2	CDK-subunit 2 (.1)		Lus10036579 [exp]	96.8	0.8721
AT5G23750			Remorin family protein (.1.2)		Lus10001477 [exp]	102.4	0.8731
AT5G67090			Subtilisin-like serine endopep...		Lus10024815 [exp]	106.1	0.8671
AT4G32480			Protein of unknown function (D...		Lus10033683 [exp]	107.7	0.8661
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10001114 [exp]	107.9	0.8655
AT1G29680			Protein of unknown function (D...		Lus10005415 [exp]	109.1	0.8647

Compare expression of checked genes

Lus10031809 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.