Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45140 929 / 0 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) AT1G17420 765 / 0 ATLOX3, LOX3 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) AT1G72520 753 / 0 ATLOX4, LOX4 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G67560 721 / 0 ATLOX6, LOX6 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G55020 650 / 0 ATLOX1, LOX1 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) AT3G22400 625 / 0 ATLOX5, LOX5 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039094 [exp] 1202 / 0 AT3G45140 946 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10032087 [exp] 1069 / 0 AT3G45140 894 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10002547 [exp] 1065 / 0 AT3G45140 971 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10041646 [exp] 1061 / 0 AT3G45140 939 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10002545 [exp] 1012 / 0 AT3G45140 991 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10027379 [exp] 949 / 0 AT1G72520 867 / 0.0 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Lus10031236 [exp] 934 / 0 AT3G45140 805 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10031809 [exp] 868 / 0 AT3G45140 753 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10013151 [exp] 793 / 0 AT1G17420 1397 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G015500 [exp] 1117 / 0 AT3G45140 975 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.017G046200 [exp] 1115 / 0 AT3G45140 979 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015400 [exp] 1083 / 0 AT3G45140 990 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.009G022400 [exp] 1064 / 0 AT3G45140 1008 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015300 [exp] 1041 / 0 AT3G45140 943 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.010G057100 [exp] 789 / 0 AT1G67560 1144 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.008G178000 [exp] 785 / 0 AT1G67560 1155 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.001G167700 [exp] 774 / 0 AT1G17420 1444 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Potri.013G022000 [exp] 644 / 0 AT1G55020 1311 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.005G032600 [exp] 639 / 0 AT1G55020 1284 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00305 [flax] [poplar] Lipoxygenase Lipoxygenase CL0321 [flax] [poplar] PLAT PF01477 [flax] [poplar] PLAT PLAT/LH2 domain
Representative CDS sequence Show only first row Show all	>Lus10031810 pacid=23180693 polypeptide=Lus10031810 locus=Lus10031810.g ID=Lus10031810.BGIv1.0 annot-version=v1.0 ATGCAGCCCACCGCTCTCTCCGGCGGCCAAACGGCGGTCCCAACCGTCTCGATTAACGGTGACGGCCCTACTACTACTACTACTACTACTACCACCCTTT CCTTCCCTTCCACGTCACCGACGTCCACTGTCCAGATGAGGAATAGCCTTAACGCCGTGGCTGACGGAAGTAGGTCAGGGAGGAATAGTAACGGCGTTAC TACTTCTGTTAAAGCTGTTTCAAGCCGTACGGTACCACCGGAAAAGGTGACGGTGCAAGTTAAGGCGGTTGTGACCGTTAAACAGACAGGCGGCTTGCTC TCCAGCATCGGGATTGGTCACGAAGACATCTCCGATTGGTTTGGTCGAACCTTTCAGCTTCACCTCATCAGTTCCCACCTTCACTCCGAGACGGGATTAG AGAAGGCAACGATCAAATCATATGCGAAAAAGGCAATAGAGGAGAATGGAGACATCAAATACGAGGCCAAGTTTGAAGTCCCTGTTGATTTCGGAGAAAT CGGTGCGGTTATGGTCGAGAATCAGCACAACTACGAGATGTTTCTCAAGGACATTATCCTCGAGAGCTCTCTTGTCCGCAACCCGATGAACATCCCATGC GACTCGTGGGTTCACCCCACTTCCCAAAATCCTCGTCACAGAATCTTCTTCACCACCAAGTCGTACTTGCCGTCCGATACGCCGGACGGGCTCACCAGGT ACAGAGAAGAAGAGCTGAACGCTCTACGCGGCGATGGCCTGGGAGAGCGCAAGAAGGGCGAAAGAATCTACGATTACGATGTCTACAACGATCTCGGAAA CCCTGACAGCAGCCCCGATCTCGCCAGACCCGTTCTCGGCGGGAAACAGAATTTTTTTTTTTTTTTCTCTTATCCTCGCCGGATCCGGACCGGACGTGCT CGAACTAAATCCGATCCGAAAACGGAATCGAGGAGTAGCGATTTCTACGTTCCGCGCGATGAGGAGTTTTCCGATGTGAAGCAGTCGTCGTTTTCGTACA AGACGCTGTCGTCGGTACTGCGGGCGGTGATTCCCACGGTGGAGACGCTGTTCATCGATCCGGACCTTGGGTTTCCTAATTTTACCGCCATTGATTCGTT GTTCGATCAAGGTCTCAACCTGCCTCCTCGCACCGTGGATCGGTCTTGGACGGACATTCTCCCCCGGCTCATTAGGACCGTCGCCGAGAGCTCCAACGAT GTCCTGCAGTTTGAGGTTCCTGAGGCTATGGAGAGGGACAGATTTTTCTGGCTGAAAGATGAGCAGTTTGGCAGGCAGACTCTCGCTGGTGTTAATCCTT GTAGCATAGAGTTGGTCAAGGAATGGCCATTGAAGAGCAAGCTTGACCCGAATGTTTATGGTCCGCCAGAATCTGCAATCACCACTGAGATCGTTGAGAA GCAAATTAAAGGATTCATGACTGTTGATGAGGCTATGAAGCAAAAGAAGCTCTTCATCATAGACTACCATGATCTGCTGCTGCCATTTGTGAACCTTGTG AGGAAGCTGGAAGGAACTACACTATACGGGTCTCGAGCATTGTTCTTTCTTACTCCGGCTGGAACACTGAAGCCGATTGCGATCGAACTTACCAGGCCCC CAATGGACGGAAAGCCCCAATGGAAGAAAGCCTATAGGGAATCAAACTGTTCTTCCACCGAGGAATGGCTATGGAAGCTAGCCAAAGCTCACGTCCTTGC ACATGATTCTGGTTATCATGAGCTCGTTAGCCACTGGCTGAGAACGCATGCTTGCACAGAACCATACATAATCGCGACAAATCGTCAGCTGAGTGCAATG CACCCTATCAACAGACTCTTGCAACCTCACTTCCGATACACTATGGAGATCAACTCTCTAGCTCGCCAAGCTCTCATAAACGCAGACGGCATCATTGAAA GAGCCTTCTCTCCTCTCAAATACTCGATGCTGCTCAGCTCTGCAGTCTACGATCAATCTTGGCGCTTCGACTACGAGGCGCTTCCGAAGGATGTAGTAAG GCGAGGAATGGCTGTTGAAGACCCATCAGCCCCACACGGCCTAAAGCTAACAATCGAAGACTACCCATATGCTAGCGATGGGTTAATCCTATGGGACGCA TTAACGCAATGGATCACCGACTACGTCAACCACTACTATCCAGATCCAACTTTCATCTCCAAAGACTCAGAGCTTCAATCCTGGTGGACAGAGATTCGCA CAGTCGGGCATCAGGACAAGAAGGATGAGACCTGGTGGCCGAACCTCAAAACCCCACTCGACCTCGTCGAGATCCTTTCCACAATCGCCTGGGTAGCATC GGCTCAGCACGCAGCAGTCAACTTCGGACAGTACCCCTACGGCGGCTACTTCCCCAACAGGCCTTCGATCGCCAGAACGAACATGCCAGACGAGGATCCG AGGGACGAAAAGGAGTGGGAAGAGAAGTTCATGGTGAAGCCCGAATCAGTGATGCTCGAAATGTTCCCCTCGCAGTTTCAGGCCTCGGCCGTTCAGGCCT CGGCCGTGTTGGCTGTGCTCGACGTCCTGTCGAGCCATTCTGAAGATGAAGAGTACATTGGACAAGTGATGGAGCCCGCTTGGAGAGATGATGCTGTGGT CAAGGCGGCTTTCGAGAAGTTTCGAGGGAGGCTGGAGGTGCTCGAATCGGTCATCGATGAACGGAATGGAAATTCGAAGCTGAGGAACAGGAATGGTGCT GGGGTTCCTCCTTATGAGCTTCTGAAGCCTGTTTCTGAGCCTGGTATTACTGGCAAAGGTGTTCCTTACAGTATCTCTATCTAA
AA sequence Show only first row Show all	>Lus10031810 pacid=23180693 polypeptide=Lus10031810 locus=Lus10031810.g ID=Lus10031810.BGIv1.0 annot-version=v1.0 MQPTALSGGQTAVPTVSINGDGPTTTTTTTTTLSFPSTSPTSTVQMRNSLNAVADGSRSGRNSNGVTTSVKAVSSRTVPPEKVTVQVKAVVTVKQTGGLL SSIGIGHEDISDWFGRTFQLHLISSHLHSETGLEKATIKSYAKKAIEENGDIKYEAKFEVPVDFGEIGAVMVENQHNYEMFLKDIILESSLVRNPMNIPC DSWVHPTSQNPRHRIFFTTKSYLPSDTPDGLTRYREEELNALRGDGLGERKKGERIYDYDVYNDLGNPDSSPDLARPVLGGKQNFFFFFSYPRRIRTGRA RTKSDPKTESRSSDFYVPRDEEFSDVKQSSFSYKTLSSVLRAVIPTVETLFIDPDLGFPNFTAIDSLFDQGLNLPPRTVDRSWTDILPRLIRTVAESSND VLQFEVPEAMERDRFFWLKDEQFGRQTLAGVNPCSIELVKEWPLKSKLDPNVYGPPESAITTEIVEKQIKGFMTVDEAMKQKKLFIIDYHDLLLPFVNLV RKLEGTTLYGSRALFFLTPAGTLKPIAIELTRPPMDGKPQWKKAYRESNCSSTEEWLWKLAKAHVLAHDSGYHELVSHWLRTHACTEPYIIATNRQLSAM HPINRLLQPHFRYTMEINSLARQALINADGIIERAFSPLKYSMLLSSAVYDQSWRFDYEALPKDVVRRGMAVEDPSAPHGLKLTIEDYPYASDGLILWDA LTQWITDYVNHYYPDPTFISKDSELQSWWTEIRTVGHQDKKDETWWPNLKTPLDLVEILSTIAWVASAQHAAVNFGQYPYGGYFPNRPSIARTNMPDEDP RDEKEWEEKFMVKPESVMLEMFPSQFQASAVQASAVLAVLDVLSSHSEDEEYIGQVMEPAWRDDAVVKAAFEKFRGRLEVLESVIDERNGNSKLRNRNGA GVPPYELLKPVSEPGITGKGVPYSISI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10031810 [exp]	0	1
AT2G38870			Serine protease inhibitor, pot...		Lus10024870 [exp]	1.7	0.9539
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10030033 [exp]	2.6	0.9547
					Lus10041164 [exp]	6.3	0.9539
AT5G57510			unknown protein		Lus10017598 [exp]	12.6	0.9316
AT1G29860	WRKY	ATWRKY71, WRKY7...	WRKY DNA-binding protein 71 (....		Lus10007326 [exp]	15.1	0.8773
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10021312 [exp]	15.1	0.9520
AT1G78410			VQ motif-containing protein (....		Lus10023308 [exp]	16.7	0.9347
AT1G73260		ATKTI1	ARABIDOPSIS THALIANA KUNITZ TR...		Lus10029429 [exp]	20.6	0.9175
AT1G20870			HSP20-like chaperones superfam...		Lus10018368 [exp]	23.6	0.9351
AT5G39160			RmlC-like cupins superfamily p...		Lus10021980 [exp]	23.7	0.9360

Compare expression of checked genes

Lus10031810 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.