Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01410 436 / 4e-153 NHL domain-containing protein (.1) AT2G16760 96 / 5e-22 Calcium-dependent phosphotriesterase superfamily protein (.1) AT2G47370 84 / 8e-18 Calcium-dependent phosphotriesterase superfamily protein (.1) AT5G28660 55 / 7e-09 NHL domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031240 [exp] 645 / 0 AT2G01410 458 / 1e-161 NHL domain-containing protein (.1) Lus10015347 [exp] 94 / 2e-21 AT2G16760 374 / 6e-130 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10001126 [exp] 89 / 7e-19 AT4G18905 427 / 5e-142 Transducin/WD40 repeat-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G156300 [exp] 514 / 0 AT2G01410 431 / 3e-151 NHL domain-containing protein (.1) Potri.006G111600 [exp] 468 / 4e-166 AT2G01410 375 / 5e-129 NHL domain-containing protein (.1) Potri.014G120300 [exp] 91 / 2e-20 AT2G16760 393 / 1e-137 Calcium-dependent phosphotriesterase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031811 pacid=23180786 polypeptide=Lus10031811 locus=Lus10031811.g ID=Lus10031811.BGIv1.0 annot-version=v1.0 ATGTCTCCGATCACGATCCTCTCCTTAATCCTCCTCTTCATAACGCCGATTCTTTCGACAGCCAGAACCCCCCATCTCATCAAATTCCGATCCCCGAATC TCTACCCAGAAGGCCTCGCCTACGATTCCTCCGCCCAGCACTTCATCGTCGGATCTCTCCGCAACCGCACGATCCACTCCGTCTCGGATGCAGGCGTCGT CGAAACCCTCATCTCCGACCCTTCACTCCCTTCCAACTCCACAATCCTAGGATTAGCTATAGACACGGTCAACAACCGCCTCCTCGCCGCCGTCCACTCC ATGCCCCCTCTCCTGATCTTCAATGCCCTCGCCGCCTACGATCTCAAATCCCGCCGCCGCATGTTCCTCTCCCTCCTCCCCGACGCCGATTCCTCCTCCT CCTCCTCTGCCTCCCGCCCAGTAGCCAACGCAGTCGCCGTCGATTTCAAAGGCAACGCATACGTCACCAACTCCTTAGGCACAGAGGACGGCAACTTCAT CTGGAAAGTCGATCCACAAGGAGAGGCGTCGATCTTCTCCAGATCGCCTCTCTTCAACCGATTCCCCGTCGATCGCGACCTCCCGTACAGCAACTCGGGG CTCAACGGCATCGCTTACAACAGCAAAGGATACCTCCTCGTGATCCAGAGCAACACGGGGAAGATGTTCAAAGTCGACGAGGTGGACGGGACTGCAAGGA GGGTTTTACTGCCGTTGGATCTGATCCACGGCGATGGGATCGCGATCAGGAAGAGAGACGGCGTCGTATTGGTGGTGTCGCATAAGAAGCTGTGGTTCCT GAAGAGCGAAGACAGCTGGTCTGAGGGAGTGGTGTATGACGAGACTGCCCTCGAGGAGGAAGGGTTCGCTACTGCGGTGGCTACGGCGGGGGAGGACAGG GCGTATGTGTTATATGGGAGCGTGATGGAGGGCATTTTGGGAAATGGAGGAGGAGTTAGGGAGTGGTTTGAGATTGAGGAGATAAGGTCAAGGAAAGAAG GGGAGGATGAGAATATCTGGCTGTATGTTATGGTTGGGCTGGGCCTGGCCTACTTTTTGTTTTGGAGATTTCAGATGAAGCAGCTGGTTAGGAATATGGA CAAAAAGATCACTTGA
AA sequence Show only first row Show all	>Lus10031811 pacid=23180786 polypeptide=Lus10031811 locus=Lus10031811.g ID=Lus10031811.BGIv1.0 annot-version=v1.0 MSPITILSLILLFITPILSTARTPHLIKFRSPNLYPEGLAYDSSAQHFIVGSLRNRTIHSVSDAGVVETLISDPSLPSNSTILGLAIDTVNNRLLAAVHS MPPLLIFNALAAYDLKSRRRMFLSLLPDADSSSSSSASRPVANAVAVDFKGNAYVTNSLGTEDGNFIWKVDPQGEASIFSRSPLFNRFPVDRDLPYSNSG LNGIAYNSKGYLLVIQSNTGKMFKVDEVDGTARRVLLPLDLIHGDGIAIRKRDGVVLVVSHKKLWFLKSEDSWSEGVVYDETALEEEGFATAVATAGEDR AYVLYGSVMEGILGNGGGVREWFEIEEIRSRKEGEDENIWLYVMVGLGLAYFLFWRFQMKQLVRNMDKKIT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01410			NHL domain-containing protein ...		Lus10031811 [exp]	0	1
AT2G01410			NHL domain-containing protein ...		Lus10031240 [exp]	1.7	0.8853
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10018705 [exp]	2.0	0.8790
AT5G16370		AAE5	acyl activating enzyme 5 (.1)		Lus10039161 [exp]	2.0	0.8669
AT4G14430		PEC12, IBR10, E...	DELTA\(3\), DELTA\(2\)-ENOYL C...		Lus10022199 [exp]	3.9	0.8773
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Lus10028713 [exp]	4.9	0.8320
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10021304 [exp]	6.0	0.8214
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Lus10006071 [exp]	8.0	0.8014
AT4G05320		UBQ10	polyubiquitin 10 (.1.2.3.4.5.6...		Lus10018367 [exp]	8.4	0.8157
AT1G80180			unknown protein		Lus10014488 [exp]	8.8	0.8267
AT5G03990			unknown protein		Lus10016362 [exp]	12.8	0.8338

Compare expression of checked genes

Lus10031811 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.