Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20780 993 / 0 RHL3, HYP6, BIN3, ATTOP6B ROOT HAIRLESS 3, ELONGATED HYPOCOTYL 6, BRASSINOSTEROID INSENSITIVE 3, topoisomerase 6 subunit B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031241 [exp] 1261 / 0 AT3G20780 1014 / 0.0 ROOT HAIRLESS 3, ELONGATED HYPOCOTYL 6, BRASSINOSTEROID INSENSITIVE 3, topoisomerase 6 subunit B (.1) Lus10031813 [exp] 359 / 5e-122 AT3G20780 279 / 3e-91 ROOT HAIRLESS 3, ELONGATED HYPOCOTYL 6, BRASSINOSTEROID INSENSITIVE 3, topoisomerase 6 subunit B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G211000 [exp] 1065 / 0 AT3G20780 1122 / 0.0 ROOT HAIRLESS 3, ELONGATED HYPOCOTYL 6, BRASSINOSTEROID INSENSITIVE 3, topoisomerase 6 subunit B (.1) Potri.T085401 [exp] 703 / 0 AT3G20780 798 / 0.0 ROOT HAIRLESS 3, ELONGATED HYPOCOTYL 6, BRASSINOSTEROID INSENSITIVE 3, topoisomerase 6 subunit B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL0329 [flax] [poplar] S5 PF09239 [flax] [poplar] Topo-VIb_trans Topoisomerase VI B subunit, transducer
Representative CDS sequence Show only first row Show all	>Lus10031812 pacid=23180795 polypeptide=Lus10031812 locus=Lus10031812.g ID=Lus10031812.BGIv1.0 annot-version=v1.0 ATGGATACTGGAGGCAGCAGTGAAAGCCCCGCGGAGCAGCCGACGAAGAAAGGCAAAGCCAGAGCTCCCAAGAAGGCAACGGAGAGCGTTCTCAAGCAGA AATCCCCAGCTGAGTTCTTCGCGGAGAACAAGAATATTGCTGGTTTTGATAATCCAGGGAAGTCACTATACACTACGGTGAGGGAGCTAGTGGAGAATTC GTTGGATTCGGCTGAATCCATCTCCGAGCTTCCTGTTGTGGAGATCACAATCGAAGAGATTGGGAAAAGTAAGTTCAATTCCATGATTGGACTTATCGAT CGGGAGCGAGTTGATGCCCAACTCTATGACGATTACGAGACAGTAAAGGAACGCGAGAGAAGATTGGCGAAGGAGGCTCGTGCCCAGGAAATCCAAGCGA AGAATGTTTCTCTTGGAAAGAAAGTTAAAGAGCAGTCTGCTGCAAAGGGCATGAAGGGTCGAGGCGAGGCTTCATTTTACCGAGTTACATGCAAGGATAA TGGGAAAGGAATGCCACACGATGACATTCCAAATATGTTCGGACGAGTTCTATCTGGGACTAAGTATGGCCTCAAACAGACGCGTGGAAAGTTTGGTCTC GGCGCAAAAATGGCGCTGATATGGTCCAAAATGAGCACAGGGCTTCCTATCGAAATATCATCTTCAATGAAGAGGCAGAGTTATGTTTCCTTCTGCCGGC TAGACATAGACATCCATAGGAACACACCTCATGTTCATCTACATGAAAAGAGGGAGAATGATAACGGGTGGCATGGAGCTGAGATTCAAGTGGTTATTGA AGGCAACTGGACGACATACCGTTCGAAGATATTGCATTACATGAGGCAAATGGCTGTTATCACTCCGTACGCTCAATTTCTATTCAGATTCATATCGGAG GCATCAGATAAAAATGTGACCGTGAAATTTGCTCGGAGAACTGATGTTATGCCTCCAGTTCCTCCTGAGACAAGGCATCACCCGTCATCTGTCGATATTC TGCTGATAAAACGCCTCATCGCAGAAACCTCAAAGCCAACCCTTTTGCAGTTTTTGCAGCACGAATTTGTCAATATTGGGAAATCGCATGCTGAGCGTTT AATTGGGGAAATGGGGCCGGACTTCACTCTGAAAATGGCTGTCAAAACCTTGACCGATCAGCAGATAGTTCGCATACACCAGTTGTTCCGTCAAGCCAAG TTTGATGACCCTACTGGAGATGGTTTGAACATCTTCCGGTTTGCGAATCGGATCCCACTTCTGTTCGAGCAAGGCGCTGATGTCGTTACGAGGACTGCAC TTAAGAGAATAAACTGGGGGACTTACAAGATGAACCAGAGCCAGGATAAAGTAGGCGTGTTCGTGAGCATCGTCAGCACGAAGATCCCGTTCAAGGGGAC TGGGAAGGAATACATTGGAGACGATATCAAGGAGATTGCTACTGCTGTCAAGTTGGCCATTCAGCAGTGCTGCAATCAGCTGAAGGCGAAAATCGTGAAG CGAAATCAGGCACGCGAACAACAAGAACGGAAACGAAACTTAAGCAGGTATATTCCGGATGCCACGAATGCTATATACGACGTGCTGCGAGAGATGTCGC AGGTGCATGCATCGAAGAAGAGGAAGTTTGACGAGGAAGATGCAGAACTGCTTTCCAAAGTTTCGTCTCGAGTGATAACGAAGGAGACACTCAAGGAAAA GCTTGCTCAACACGTCGAACAGGTCGACTATGAGATGGCGCTGGAATACGCGACACAGAGTGGAGTGAGCGAGGAGCCAAGAGAGGAAGTGTACATCAAG CCGTTTGATGCTGATGATAGCAACGGGAAGTTCGTGGACTTCCGCAGTCCGGCGTTTGTGTTCCGACTCTTTCTGTGA
AA sequence Show only first row Show all	>Lus10031812 pacid=23180795 polypeptide=Lus10031812 locus=Lus10031812.g ID=Lus10031812.BGIv1.0 annot-version=v1.0 MDTGGSSESPAEQPTKKGKARAPKKATESVLKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNSMIGLID RERVDAQLYDDYETVKERERRLAKEARAQEIQAKNVSLGKKVKEQSAAKGMKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGL GAKMALIWSKMSTGLPIEISSSMKRQSYVSFCRLDIDIHRNTPHVHLHEKRENDNGWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFRFISE ASDKNVTVKFARRTDVMPPVPPETRHHPSSVDILLIKRLIAETSKPTLLQFLQHEFVNIGKSHAERLIGEMGPDFTLKMAVKTLTDQQIVRIHQLFRQAK FDDPTGDGLNIFRFANRIPLLFEQGADVVTRTALKRINWGTYKMNQSQDKVGVFVSIVSTKIPFKGTGKEYIGDDIKEIATAVKLAIQQCCNQLKAKIVK RNQAREQQERKRNLSRYIPDATNAIYDVLREMSQVHASKKRKFDEEDAELLSKVSSRVITKETLKEKLAQHVEQVDYEMALEYATQSGVSEEPREEVYIK PFDADDSNGKFVDFRSPAFVFRLFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20780		RHL3, HYP6, BIN...	ROOT HAIRLESS 3, ELONGATED HYP...		Lus10031812 [exp]	0	1
AT3G20780		RHL3, HYP6, BIN...	ROOT HAIRLESS 3, ELONGATED HYP...		Lus10031241 [exp]	1.0	0.9489
AT4G23800		3xHMG-box2, AT4...	3xHigh Mobility Group-box2, HM...		Lus10023090 [exp]	3.5	0.9045
AT1G60640			unknown protein		Lus10033578 [exp]	4.0	0.8854
AT4G00230		XSP1	xylem serine peptidase 1 (.1)		Lus10000395 [exp]	10.8	0.8634
AT5G58930			Protein of unknown function (D...		Lus10018206 [exp]	13.4	0.8901
AT1G13030			sphere organelles protein-rela...		Lus10006228 [exp]	17.0	0.8725
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10019248 [exp]	20.1	0.8838
AT1G67590			Remorin family protein (.1.2)		Lus10015817 [exp]	20.2	0.8554
AT5G66960			Prolyl oligopeptidase family p...		Lus10017568 [exp]	21.9	0.8633
AT1G50660			unknown protein		Lus10021521 [exp]	23.2	0.8835

Compare expression of checked genes

Lus10031812 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.