Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20780 279 / 3e-91 RHL3, HYP6, BIN3, ATTOP6B ROOT HAIRLESS 3, ELONGATED HYPOCOTYL 6, BRASSINOSTEROID INSENSITIVE 3, topoisomerase 6 subunit B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031812 [exp] 359 / 1e-122 AT3G20780 1016 / 0.0 ROOT HAIRLESS 3, ELONGATED HYPOCOTYL 6, BRASSINOSTEROID INSENSITIVE 3, topoisomerase 6 subunit B (.1) Lus10031241 [exp] 359 / 1e-122 AT3G20780 1014 / 0.0 ROOT HAIRLESS 3, ELONGATED HYPOCOTYL 6, BRASSINOSTEROID INSENSITIVE 3, topoisomerase 6 subunit B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G211000 [exp] 277 / 4e-90 AT3G20780 1122 / 0.0 ROOT HAIRLESS 3, ELONGATED HYPOCOTYL 6, BRASSINOSTEROID INSENSITIVE 3, topoisomerase 6 subunit B (.1) Potri.T085401 [exp] 80 / 9e-18 AT3G20780 798 / 0.0 ROOT HAIRLESS 3, ELONGATED HYPOCOTYL 6, BRASSINOSTEROID INSENSITIVE 3, topoisomerase 6 subunit B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF09239 [flax] [poplar] Topo-VIb_trans Topoisomerase VI B subunit, transducer
Representative CDS sequence Show only first row Show all	>Lus10031813 pacid=23180581 polypeptide=Lus10031813 locus=Lus10031813.g ID=Lus10031813.BGIv1.0 annot-version=v1.0 ATGAACCAGAGCCAGGATAAAGTAGGCGTGTTCGTGAGCATCGTCAGCACGAAGATCCCCTTCAAGGGGACTGGAAAAGAATACATTGGAGACGATATCA AGGAGATTGCTACGGCTGTCAAGTTGGCCATTCAGCAGTGCTGCTATCAGCTGAAGGCAAAAATCGTGAAGCGAAATCAAGCACGCGAACAACAAGAGAG GAAACGAAACTTAAGCAGGTATATTCCGGACGCCACGAATGCTATATACGACGTACTGCGAGAGATGTCGCAGGTGCACGCATCGAAGAAGAGGAAGTTT GAGGAGCAAGATGCAGAACTGCTTTCCAAAGTTTCGTCTCGAGTGATAACGAAAGAGACACTTAAGGAAAAGCTTGCTCAACACGTTGAACAGGTCGACT ATGAGATGGCGCTGGAATACGCGACACAGAGTGGAGTGAGCGAGGAGCCAAGAGAGGAAGTGTACATCAAGCCTTTTCATGCTGATGGTAGCAACGGAAA GTTCGTGGACTTCCGCAGTCCGGCATTTGTGTTCCGACTCATTCTGTGA
AA sequence Show only first row Show all	>Lus10031813 pacid=23180581 polypeptide=Lus10031813 locus=Lus10031813.g ID=Lus10031813.BGIv1.0 annot-version=v1.0 MNQSQDKVGVFVSIVSTKIPFKGTGKEYIGDDIKEIATAVKLAIQQCCYQLKAKIVKRNQAREQQERKRNLSRYIPDATNAIYDVLREMSQVHASKKRKF EEQDAELLSKVSSRVITKETLKEKLAQHVEQVDYEMALEYATQSGVSEEPREEVYIKPFHADGSNGKFVDFRSPAFVFRLIL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20780		RHL3, HYP6, BIN...	ROOT HAIRLESS 3, ELONGATED HYP...		Lus10031813 [exp]	0	1
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10019139 [exp]	10.9	0.8496
AT5G40840		SYN2, ATRAD21.1	Sister chromatid cohesion 1 \(...		Lus10022338 [exp]	14.9	0.8489
AT5G06750			Protein phosphatase 2C family ...		Lus10004170 [exp]	26.9	0.8124
AT4G39790			Protein of unknown function (D...		Lus10024039 [exp]	30.3	0.8401
AT5G06770	C3HZnF		KH domain-containing protein /...		Lus10004183 [exp]	31.5	0.8411
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10010642 [exp]	33.2	0.8452
AT5G58230		MSI1, MEE70, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10033459 [exp]	33.7	0.8405
AT5G25590			Protein of unknown function (D...		Lus10037902 [exp]	34.5	0.8455
AT3G24320		CHM1, ATMSH1, C...	CHLOROPLAST MUTATOR, MUTL prot...		Lus10014462 [exp]	41.0	0.8347
AT5G58130		ROS3	REPRESSOR OF SILENCING 3, RNA-...		Lus10040584 [exp]	41.2	0.8163

Compare expression of checked genes

Lus10031813 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.