Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20790 423 / 3e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031242 [exp] 617 / 0 AT3G20790 507 / 2e-180 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T085501 [exp] 482 / 2e-172 AT3G20790 488 / 3e-174 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G210900 [exp] 482 / 2e-172 AT3G20790 488 / 3e-174 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01408 [flax] [poplar] GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold
Representative CDS sequence Show only first row Show all	>Lus10031814 pacid=23180639 polypeptide=Lus10031814 locus=Lus10031814.g ID=Lus10031814.BGIv1.0 annot-version=v1.0 ATGGCGAGTTCACCAAACATCGTGATTCTTGGAGCTGGCATCTTCGTCAAGACTCAATACATTCCCAGACTGGCTGAGATCTCCAATCTGATCGTTCTCC GCGCCATATGGAGCCGATCCGAGGAGTCGGCGATGGCAGCTGTGGAGATTGCGCGTAGGCATTTCCCTGACGTGGAGTGCAAATGGGGAGACAAGGGACT GGACGAGATTCTCAACGACGAGTCCATCATTGGAGCTGCTGTTGTTCTTGCTGGACAAACTCAGGTTGAGATGTCCTTGAAGCTATTGAAGGCTGGGAAG CATGTTCTTCAGGCGGCAAATGAGATAGAAGCTGCACTCGCAAGCTACAAATCTCTTTGTGCTAAAACCCCTGGGCAACCGATATGGGCTGTGGCAGAGA ACTATAGGTTTGAACCTGCTTTTGAAGAGGGAGGTTTCATTCTCGACATGGGGGTGCACTTCATTGCAGGACTCAGGATGCTTGTTGGGTGTGAAGTAGT CACAGTGTCTGCCAGAACCTCTCACGTTGATTCCATCTTACCTCCACCAGACAACATATCTGCAGTCATTCATCTAGAGAATGGATGTTCTGGAATTTTC GCAATGGTTGTCTCTTCAAGGTCACCTAAGGTAGTCTGGCGAGTTGTTGGACTAAAAGGCACGCTGCAAATTCAGCGTGGCAGTGAAGATGGACGCCATG GTTACCTGGTATCATTTTTCGGCGGTGATGGACAAAGCAAAAGCAGCTTCCATGCATTTAGTGGTGTAACAGAGGAGTTGAAGATCTTCTTAAATGACAT AACGCAGGCTTCCTTAAAGAAGGATAGCGGGTACGAAGCTGAGCCGCGGCTCACATTCTTGGAAGGCGCTCGAGATGTGGCTCTTCTGGACGCAATGCTC GAGTCCGGGAGCAAGAATGGAGCCATGGTCCAGGTGAAGCAGTTTTAA
AA sequence Show only first row Show all	>Lus10031814 pacid=23180639 polypeptide=Lus10031814 locus=Lus10031814.g ID=Lus10031814.BGIv1.0 annot-version=v1.0 MASSPNIVILGAGIFVKTQYIPRLAEISNLIVLRAIWSRSEESAMAAVEIARRHFPDVECKWGDKGLDEILNDESIIGAAVVLAGQTQVEMSLKLLKAGK HVLQAANEIEAALASYKSLCAKTPGQPIWAVAENYRFEPAFEEGGFILDMGVHFIAGLRMLVGCEVVTVSARTSHVDSILPPPDNISAVIHLENGCSGIF AMVVSSRSPKVVWRVVGLKGTLQIQRGSEDGRHGYLVSFFGGDGQSKSSFHAFSGVTEELKIFLNDITQASLKKDSGYEAEPRLTFLEGARDVALLDAML ESGSKNGAMVQVKQF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20790			NAD(P)-binding Rossmann-fold s...		Lus10031814 [exp]	0	1
AT3G20790			NAD(P)-binding Rossmann-fold s...		Lus10031242 [exp]	1.0	0.8432
AT3G07470			Protein of unknown function, D...		Lus10025861 [exp]	1.4	0.8234
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Lus10015320 [exp]	3.5	0.7902
AT1G08640		CJD1	Chloroplast J-like domain 1 (....		Lus10042564 [exp]	3.9	0.8003
AT4G31600			UDP-N-acetylglucosamine (UAA) ...		Lus10020119 [exp]	7.7	0.7577
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10037908 [exp]	8.9	0.7870
AT1G25570			Di-glucose binding protein wit...		Lus10034275 [exp]	9.5	0.7591
AT3G27230			S-adenosyl-L-methionine-depend...		Lus10024318 [exp]	10.8	0.7453
AT1G12460			Leucine-rich repeat protein ki...		Lus10007020 [exp]	15.5	0.7576
AT2G32580			Protein of unknown function (D...		Lus10029975 [exp]	18.3	0.7509

Compare expression of checked genes

Lus10031814 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.