Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12970 513 / 2e-176 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT3G57880 485 / 9e-166 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT1G51570 476 / 5e-162 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G06850 394 / 4e-130 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G11610 398 / 2e-129 NTRB, ATNTRB C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G48060 377 / 4e-121 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G22610 358 / 5e-114 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G00700 316 / 2e-98 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G61300 311 / 1e-96 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G04150 308 / 2e-95 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031244 [exp] 601 / 0 AT5G12970 979 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10012026 [exp] 486 / 6e-166 AT3G57880 1496 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10016280 [exp] 484 / 3e-165 AT3G57880 1499 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10021030 [exp] 401 / 8e-133 AT5G06850 1383 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10023823 [exp] 400 / 3e-132 AT5G06850 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10000605 [exp] 385 / 3e-124 AT4G11610 1634 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10009460 [exp] 370 / 2e-122 AT1G22610 627 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10018839 [exp] 374 / 6e-120 AT4G11610 1348 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10001538 [exp] 368 / 3e-117 AT1G22610 1425 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G210801 [exp] 536 / 0 AT5G12970 1300 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.T085601 [exp] 535 / 0 AT5G12970 1315 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G015700 [exp] 526 / 0 AT5G12970 1295 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.006G058900 [exp] 494 / 5e-169 AT3G57880 1372 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.016G049100 [exp] 488 / 9e-167 AT3G57880 1425 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G271400 [exp] 422 / 5e-138 AT5G48060 1481 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.009G065600 [exp] 412 / 8e-137 AT5G06850 1308 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.006G058700 [exp] 399 / 7e-132 AT5G06850 1321 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.016G049300 [exp] 395 / 2e-130 AT5G06850 1355 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.014G081700 [exp] 397 / 4e-129 AT4G11610 1422 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0484 [flax] [poplar] Peroxisome PF08372 [flax] [poplar] PRT_C Plant phosphoribosyltransferase C-terminal
Representative CDS sequence Show only first row Show all	>Lus10031816 pacid=23180759 polypeptide=Lus10031816 locus=Lus10031816.g ID=Lus10031816.BGIv1.0 annot-version=v1.0 ATGATGCAGAAGCCACCACAGTCGGTGGACTTTGCTCTCAAGGAGACCTCGCCGAAGATCGGTGCAGGGGCGATAACAGGCGACAAGCTGTCCTCCACCT ATGATCTCGTGGAGCAAATGCAGTATCTTTACGTCCGCGTGGTGAAAGCCAGGGATCTCCCATCCAAGGACGTCACAGGAAGCTGTGATCCATACGTTGA AGTGAAACTCGGTAACTACAAAGGCATCACCAGACATTTCGAGAAGAAGTCGAACCCCGAATGGAACCAAGTCTTTGCCTTTTCAAAGGAAAGAATCCAA GCTTCGGTTCTGGAAGTGACAGTCAAAGACAAAGATGTTGTCATGGATGACCTTATTGGTAGGATGTTGTTCGATCTCAATGATATCCCGAAACGTGTCC CACCGGATAGCCCCTTAGCTCCTCAGTGGTATAGGCTGGAAGATCGAAAGGGTGATAAAGTGAAGAATGGTGAGCTTATGTTGGCTGGTTGGGTGGGGAC ACAAGCTGATGAAGCATTCTCGGACGCTTGGCATTCTGATGCAGCAAGTGTTGGTCCTGATGGAGTTGCGAACATTCGTTCCAAGGTATATCTCTCTCCG AAGCTTTGGTATGTTAGGGTGAACGCGATCGAAGCTCAGGACTTGTTGCCTCACGATAAGACAAGGTTCCCGGAAGCTTATGTTAAAGTCACACTTGGAA ATCAAGCAATGAGGACTAGGATTTGCCCGAGTAAGACAATTAATCCGATGTGGAACGAGGATTTAGTGTTTGTAGTTGCTGAACCGTTCGAGGAACCGAT TATTTTAACCGTGGAGGACCGGTTAGGTCCTGGAAAAGATGAAACATTGGGGAGATGTGTCATTCCATTGCAGCTAGTCCAGAGAAGACTCGACCATAAA CCGGTCAACACGAGATGGCCGAGACACCCTCCACATATGGACACCAGACTGTCGCACGCTGATGCTTGCCATCCTGACGAACTCGATGAGGAGTTCGACA CTTTTCCGACAAGCAGGCCAGCGGACATTGTTAGGATGAGGTACGATCGGCTGAGGAGCATTGCGGGGAAAGTGCAGACCGTAGTGGGGGATTTGGCGAC GCAGGGGGAGAGGTTCCAGTCGTTGCTGAGCTGGAGGAGCCCGAGAGCTACTACTTTGTTTGTGACGTTCTGTTTGATTGCTGCCATTGTGCTTTACGTG ACTCCTTTCCAGGTTGTTGGACTTCTGATGGGGATCTACGTGTTGAGACATCCGAGGTTTCGGCACAAGCTTCCTTCTGTTCCTCTCAACTTCTTCAGGA GGTTGCCTGCAAGATCAGACAGCATGCTTTGA
AA sequence Show only first row Show all	>Lus10031816 pacid=23180759 polypeptide=Lus10031816 locus=Lus10031816.g ID=Lus10031816.BGIv1.0 annot-version=v1.0 MMQKPPQSVDFALKETSPKIGAGAITGDKLSSTYDLVEQMQYLYVRVVKARDLPSKDVTGSCDPYVEVKLGNYKGITRHFEKKSNPEWNQVFAFSKERIQ ASVLEVTVKDKDVVMDDLIGRMLFDLNDIPKRVPPDSPLAPQWYRLEDRKGDKVKNGELMLAGWVGTQADEAFSDAWHSDAASVGPDGVANIRSKVYLSP KLWYVRVNAIEAQDLLPHDKTRFPEAYVKVTLGNQAMRTRICPSKTINPMWNEDLVFVVAEPFEEPIILTVEDRLGPGKDETLGRCVIPLQLVQRRLDHK PVNTRWPRHPPHMDTRLSHADACHPDELDEEFDTFPTSRPADIVRMRYDRLRSIAGKVQTVVGDLATQGERFQSLLSWRSPRATTLFVTFCLIAAIVLYV TPFQVVGLLMGIYVLRHPRFRHKLPSVPLNFFRRLPARSDSML

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Lus10031816 [exp]	0	1
AT5G40200		DEGP9	DegP protease 9 (.1)		Lus10014524 [exp]	1.0	0.9444
AT2G40550		ETG1	E2F target gene 1 (.1)		Lus10030540 [exp]	4.6	0.9343
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Lus10000982 [exp]	7.5	0.9355
AT1G55870		ATPARN, AHG2	ARABIDOPSIS THALIANA POLY\(A\)...		Lus10033691 [exp]	9.0	0.9109
AT3G07690			6-phosphogluconate dehydrogena...		Lus10016364 [exp]	11.0	0.8708
AT5G10010			unknown protein		Lus10005778 [exp]	14.4	0.9018
AT2G42520			P-loop containing nucleoside t...		Lus10015977 [exp]	19.7	0.8921
AT5G35910			Polynucleotidyl transferase, r...		Lus10005691 [exp]	20.1	0.9179
AT5G41190			unknown protein		Lus10001487 [exp]	20.3	0.9196
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Lus10027170 [exp]	21.8	0.8492

Compare expression of checked genes

Lus10031816 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.