Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73730 492 / 6e-169 EIL AtEIL3, ATSLIM, SLIM1, EIL3 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1) AT3G20770 383 / 2e-125 EIL AtEIN3, EIN3 ETHYLENE-INSENSITIVE3, Ethylene insensitive 3 family protein (.1) AT2G27050 374 / 9e-123 EIL AtEIL1, EIL1 ETHYLENE-INSENSITIVE3-like 1 (.1) AT5G10120 299 / 3e-95 EIL Ethylene insensitive 3 family protein (.1) AT5G65100 288 / 4e-90 EIL Ethylene insensitive 3 family protein (.1) AT5G21120 280 / 2e-87 EIL EIL2 ETHYLENE-INSENSITIVE3-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031245 [exp] 1004 / 0 AT1G73730 556 / 0.0 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1) Lus10014331 [exp] 291 / 5e-92 AT5G65100 351 / 1e-116 Ethylene insensitive 3 family protein (.1) Lus10041709 [exp] 286 / 8e-90 AT5G65100 358 / 6e-119 Ethylene insensitive 3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G015900 [exp] 674 / 0 AT1G73730 494 / 8e-170 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1) Potri.003G210500 [exp] 655 / 0 AT1G73730 516 / 5e-178 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1) Potri.004G197400 [exp] 385 / 9e-127 AT3G20770 724 / 0.0 ETHYLENE-INSENSITIVE3, Ethylene insensitive 3 family protein (.1) Potri.009G159200 [exp] 376 / 7e-123 AT3G20770 704 / 0.0 ETHYLENE-INSENSITIVE3, Ethylene insensitive 3 family protein (.1) Potri.008G011300 [exp] 376 / 1e-122 AT3G20770 560 / 0.0 ETHYLENE-INSENSITIVE3, Ethylene insensitive 3 family protein (.1) Potri.010G247500 [exp] 374 / 8e-122 AT3G20770 578 / 0.0 ETHYLENE-INSENSITIVE3, Ethylene insensitive 3 family protein (.1) Potri.001G015966 [exp] 259 / 4e-83 AT1G73730 239 / 6e-76 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1) Potri.001G016032 [exp] 45 / 2e-05 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04873 [flax] [poplar] EIN3 Ethylene insensitive 3
Representative CDS sequence Show only first row Show all	>Lus10031817 pacid=23180711 polypeptide=Lus10031817 locus=Lus10031817.g ID=Lus10031817.BGIv1.0 annot-version=v1.0 ATGGGTGAATTGGAGGAGATCGCTGCCGATATCTGCTCGGAGATTGATGCTGATGAACTCAAGTGCGACAATCTAGCCGAGAAAGATGTCAGCGACGAGG AAATCGAACCGGATGAATTGGAGAGGCGAATGTGGAAGGATCGAGTTAAGCTCCAAAGGATTAAGGAAAGACGGAGGATTTCAGCACAGCAAGCTGCCGA AAAGCAGAAGCCGAAACACACATCGGATCAAGCTAAGAGGAAGAAGATGTCCAGAGCTCAAGATGGAATCCTCAAGTACATGCTGAAGTTAATGGAAGTC TGTCAAGCTCGAGGATTCGTTTATGGTATCATACCAGAAAAGGGCAAGCCTGTGAGTGGTGCGTCTGATAACATTCGAGCTTGGTGGAAGGAAAAGGTTA AGTTTGACAAGAATGGCCCGGCAGCTATAGCGAAGTATGAAGCCGAGTGTTTGGCTATGAATGAGGGAGATAACGCTCGACAGGGGAATTCACAGAGTGT TCTTCAGGATCTTCAGGATGCTACATTAGGATCCTTGCTGTCATCTCTGATGCAACACTGTGATCCTCCTCAAAGGAAGTATCCTTTGGAAAAGGGGGTT CCTCCGCCTTGGTGGCCGACTGGAGATGAAGATTGGTGGGGGAAATTGGGATTGCCGGGTGGTCAAACTCCACCTTATAAGAAACCACACGACCTGAAAA AGGTGTGGAAAGTTGGAGTGCTTACGGCTGTTATAAAGCACATGTCACCGAACATTGCAAAAATACGGAAGCATGTTCGCCAGTCGAAATGCTTGCAGGA TAAGATGACGGCGAAGGAGAGTGCAATCTGGTTAGCAGTATTGAGTAGGGAGGAGTCTGTAATTAGGCAGCCTAGCAGTGATAATGGTACATCTGGGATA ACTGAGGTGCCTCGAGGCGGCCGAAAGAAGCAACCTGCAGTTAGTGATGACAGTGATTACGATGTGGAAGGTGTTGATGATGGTGTGGGATCTGTATCCT CCAAAGATAGCATGAGCAATCATCCTATGGATGTGGAGCCACCCAGTAATTTGAGAGATGACTCTCCCCATCCAGTTCAGGAGAAAGAGAGGAGGGAGAA GCCGCGTAAGAGGAAGAGACCGCGAGATAAATCAAAGGATTCCGAACAACAGCCAGGGCCATCGACTAATGATGGTCATTTCTTACTTGAGCAGAGAGCT AGTTTACCTGACATGGATCACACCCATATACGGGCTCTTGAACCTCAGATGCATGCCGTCGACCTTGGAATCAATACAAATGTCACTACAATGCCCTTAG GGGAAGGGTTGGAGGGCGAACCAAACTTTAATATTCCAGAATTTAACTACCTATCCGACATTCCACCTGGTTCTGGAGAAAATATATGCCTAGACGGCAG GCAACAGCTTTATCCGTTGGCACAGAGCTCGGATATGTTTCACGGCTCGAGCTACAACTTTTATGCTCCAACTGTCAACTTTGGACCTGCTCATGGTGTG GAACAACAGACTCACTTGCCTATGGATGCATCTCATATCAGGCAAGAGGGTGATGGTTTCCAAGTGTCGGCAATACCTATGAACGAAAACGAGATACCGG GAGGAGACCTGCAGAATTTCGCCAAAGACATATTTCCTAGCGGGCAGGATAGATACTTGGGGTCTCCTTTCGACAGTGTGTCGTTGGATTTCGGAGATTT CAGCAGTCCATGCGACTTTGACATGGACAAGGATCTGCTCAAGTGCTATGGAGCATAA
AA sequence Show only first row Show all	>Lus10031817 pacid=23180711 polypeptide=Lus10031817 locus=Lus10031817.g ID=Lus10031817.BGIv1.0 annot-version=v1.0 MGELEEIAADICSEIDADELKCDNLAEKDVSDEEIEPDELERRMWKDRVKLQRIKERRRISAQQAAEKQKPKHTSDQAKRKKMSRAQDGILKYMLKLMEV CQARGFVYGIIPEKGKPVSGASDNIRAWWKEKVKFDKNGPAAIAKYEAECLAMNEGDNARQGNSQSVLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGV PPPWWPTGDEDWWGKLGLPGGQTPPYKKPHDLKKVWKVGVLTAVIKHMSPNIAKIRKHVRQSKCLQDKMTAKESAIWLAVLSREESVIRQPSSDNGTSGI TEVPRGGRKKQPAVSDDSDYDVEGVDDGVGSVSSKDSMSNHPMDVEPPSNLRDDSPHPVQEKERREKPRKRKRPRDKSKDSEQQPGPSTNDGHFLLEQRA SLPDMDHTHIRALEPQMHAVDLGINTNVTTMPLGEGLEGEPNFNIPEFNYLSDIPPGSGENICLDGRQQLYPLAQSSDMFHGSSYNFYAPTVNFGPAHGV EQQTHLPMDASHIRQEGDGFQVSAIPMNENEIPGGDLQNFAKDIFPSGQDRYLGSPFDSVSLDFGDFSSPCDFDMDKDLLKCYGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73730	EIL	AtEIL3, ATSLIM,...	ARABIDOPSIS THALIANA SULFUR LI...		Lus10031817 [exp]	0	1
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10003196 [exp]	8.8	0.8170
AT3G25570			Adenosylmethionine decarboxyla...		Lus10035083 [exp]	9.6	0.8595
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10014496 [exp]	15.9	0.8317
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10029949 [exp]	16.9	0.8679
AT4G14680		APS3	Pseudouridine synthase/archaeo...		Lus10039389 [exp]	20.9	0.8535
AT1G73730	EIL	AtEIL3, ATSLIM,...	ARABIDOPSIS THALIANA SULFUR LI...		Lus10031245 [exp]	22.1	0.8093
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10011184 [exp]	31.9	0.8246
AT5G15948		CPuORF10	conserved peptide upstream ope...		Lus10031918 [exp]	37.6	0.7411
AT2G45360			Protein of unknown function (D...		Lus10024565 [exp]	39.1	0.8306
AT2G02870			Galactose oxidase/kelch repeat...		Lus10012841 [exp]	47.4	0.8248

Compare expression of checked genes

Lus10031817 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.